Solyc03g082940.3.1 (Solyc03g082940)

Aliases : Solyc03g082940

Description : IMB1 nucleocytoplasmic import karyopherin

Gene families : OG0001300 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001300_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g082940.3.1

Target	Alias	Description	ECC score	Gene Family Method
AT5G53480	No alias	ARM repeat superfamily protein	0.06	OrthoFinder output from all 47 species
Adi_g019484	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.02	OrthoFinder output from all 47 species
Ala_g09011	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.05	OrthoFinder output from all 47 species
Aop_g19661	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.03	OrthoFinder output from all 47 species
Cba_g02724	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.03	OrthoFinder output from all 47 species
Cba_g17045	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.03	OrthoFinder output from all 47 species
Ceric.33G016000.1	Ceric.33G016000	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021348.90	No alias	Protein translocation.nucleus.nucleocytoplasmic...	0.02	OrthoFinder output from all 47 species
GSVIVT01038575001	No alias	Protein translocation.nucleus.nucleocytoplasmic...	0.09	OrthoFinder output from all 47 species
Gb_35028	No alias	IMB1 nucleocytoplasmic import karyopherin	0.04	OrthoFinder output from all 47 species
Lfl_g34606	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.02	OrthoFinder output from all 47 species
Mp6g11310.1	No alias	IMB1 nucleocytoplasmic import karyopherin	0.05	OrthoFinder output from all 47 species
Msp_g12557	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.04	OrthoFinder output from all 47 species
Ore_g30274	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.02	OrthoFinder output from all 47 species
Ore_g40488	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.02	OrthoFinder output from all 47 species
Pp3c11_26710V3.1	Pp3c11_26710	ARM repeat superfamily protein	0.02	OrthoFinder output from all 47 species
Ppi_g02369	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.04	OrthoFinder output from all 47 species
Ppi_g03961	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.03	OrthoFinder output from all 47 species
Smo124593	No alias	Protein translocation.nucleus.nucleocytoplasmic...	0.02	OrthoFinder output from all 47 species
Tin_g06671	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.03	OrthoFinder output from all 47 species
Tin_g20356	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.03	OrthoFinder output from all 47 species
Zm00001e018172_P001	Zm00001e018172	IMB1 nucleocytoplasmic import karyopherin	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030127	COPII vesicle coat	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
MF	GO:0061608	nuclear import signal receptor activity	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001494	Importin-beta_N	24	102

External Links

No external refs found!

Solyc03g082940.3.1 (Solyc03g082940)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation