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  5. Solyc03g098640.4.1

Solyc03g098640.4.1 (Solyc03g098640)


Aliases : Solyc03g098640

Description : no hits & (original description: none)


Gene families : OG0002320 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002320_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g098640.4.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00095p00178330 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT5G19750 No alias Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 0.06 OrthoFinder output from all 47 species
Adi_g006649 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g115333 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08833 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g10095 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0388.g067620 No alias not classified & original description: CDS=751-1302 0.04 OrthoFinder output from all 47 species
Azfi_s0463.g072342 No alias not classified & original description: CDS=1-954 0.03 OrthoFinder output from all 47 species
Cba_g09903 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.30G075200.1 Ceric.30G075200 not classified & original description: pacid=50608538... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000404.15 No alias No description available 0.01 OrthoFinder output from all 47 species
Nbi_g09920 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014764 No alias not classified & original description: CDS=76-984 0.03 OrthoFinder output from all 47 species
Zm00001e024048_P001 Zm00001e024048 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004797 thymidine kinase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006952 defense response IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0019136 deoxynucleoside kinase activity IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
MF GO:0019206 nucleoside kinase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007248 Mpv17_PMP22 225 283
No external refs found!