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  5. Solyc03g115050.3.1

Solyc03g115050.3.1 (RPA70B, ATRPA70B,...)


Aliases : RPA70B, ATRPA70B, Solyc03g115050

Description : component RPA1 of single-stranded-DNA binding RPA complex. component RPA1 of RPA presynaptic filament assembly factor complex


Gene families : OG0003997 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003997_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g115050.3.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00154p00046110 RPA70B,... Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.21 OrthoFinder output from all 47 species
AT5G08020 RPA70B, ATRPA70B RPA70-kDa subunit B 0.13 OrthoFinder output from all 47 species
AT5G61000 RPA70D, ATRPA70D Replication factor-A protein 1-related 0.13 OrthoFinder output from all 47 species
Ala_g25088 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.03 OrthoFinder output from all 47 species
Als_g07217 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.07 OrthoFinder output from all 47 species
Als_g08320 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.06 OrthoFinder output from all 47 species
Aop_g21131 RPA70B, ATRPA70B component *(RPA1) of RPA presynaptic filament assembly... 0.14 OrthoFinder output from all 47 species
Aspi01Gene25029.t1 RPA70D,... component *(RPA1) of RPA presynaptic filament assembly... 0.08 OrthoFinder output from all 47 species
Aspi01Gene32891.t1 RPA70B,... component *(RPA1) of RPA presynaptic filament assembly... 0.09 OrthoFinder output from all 47 species
Ceric.18G083500.1 RPA70B,... component *(RPA1) of RPA presynaptic filament assembly... 0.14 OrthoFinder output from all 47 species
Cre16.g651000 RPA70D, ATRPA70D Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.06 OrthoFinder output from all 47 species
Dac_g20470 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.12 OrthoFinder output from all 47 species
Dcu_g11388 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.11 OrthoFinder output from all 47 species
GSVIVT01007849001 RPA70B, ATRPA70B Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.18 OrthoFinder output from all 47 species
Gb_17349 RPA70B, ATRPA70B component RPA1 of single-stranded-DNA binding RPA... 0.18 OrthoFinder output from all 47 species
LOC_Os03g11540.1 RPA70B,... component RPA1 of single-stranded-DNA binding RPA... 0.17 OrthoFinder output from all 47 species
Len_g04778 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.07 OrthoFinder output from all 47 species
Len_g11233 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.03 OrthoFinder output from all 47 species
Lfl_g30854 RPA70B, ATRPA70B component *(RPA1) of RPA presynaptic filament assembly... 0.09 OrthoFinder output from all 47 species
MA_10308567g0040 RPA70B, ATRPA70B Replication protein A 70 kDa DNA-binding subunit B... 0.08 OrthoFinder output from all 47 species
MA_10327014g0020 RPA70B, ATRPA70B component RPA1 of RPA presynaptic filament assembly... 0.05 OrthoFinder output from all 47 species
MA_10331305g0010 RPA70B, ATRPA70B component RPA1 of RPA presynaptic filament assembly... 0.07 OrthoFinder output from all 47 species
MA_10356314g0010 No alias Replication protein A 70 kDa DNA-binding subunit B... 0.09 OrthoFinder output from all 47 species
MA_10379695g0010 RPA70D, ATRPA70D Replication protein A 70 kDa DNA-binding subunit B... 0.02 OrthoFinder output from all 47 species
MA_10393806g0010 RPA70B, ATRPA70B Replication protein A 70 kDa DNA-binding subunit B... 0.04 OrthoFinder output from all 47 species
Mp2g17030.1 RPA70D, ATRPA70D component RPA1 of single-stranded-DNA binding RPA... 0.16 OrthoFinder output from all 47 species
Msp_g06104 RPA70B, ATRPA70B component *(RPA1) of RPA presynaptic filament assembly... 0.17 OrthoFinder output from all 47 species
Nbi_g08948 RPA70B, ATRPA70B component *(RPA1) of RPA presynaptic filament assembly... 0.11 OrthoFinder output from all 47 species
Ppi_g40052 RPA70B, ATRPA70B component *(RPA1) of RPA presynaptic filament assembly... 0.07 OrthoFinder output from all 47 species
Spa_g41654 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.14 OrthoFinder output from all 47 species
Tin_g07108 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.13 OrthoFinder output from all 47 species
Zm00001e000841_P002 RPA70B,... component RPA1 of single-stranded-DNA binding RPA... 0.16 OrthoFinder output from all 47 species
Zm00001e038720_P001 RPA70B,... component RPA1 of single-stranded-DNA binding RPA... 0.17 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007064 mitotic sister chromatid cohesion IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008156 negative regulation of DNA replication IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
CC GO:0031390 Ctf18 RFC-like complex IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0045005 DNA-templated DNA replication maintenance of fidelity IEP HCCA
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0048478 replication fork protection IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051053 negative regulation of DNA metabolic process IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090329 regulation of DNA-templated DNA replication IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
BP GO:2000104 negative regulation of DNA-templated DNA replication IEP HCCA
InterPro domains Description Start Stop
IPR013955 Rep_factor-A_C 458 603
IPR004365 NA-bd_OB_tRNA 181 267
IPR031657 REPA_OB_2 301 395
IPR007199 Rep_factor-A_N 5 103
No external refs found!