Solyc03g115800.1.1 (Solyc03g115800)


Aliases : Solyc03g115800

Description : Putative pentatricopeptide repeat-containing protein At1g74400 OS=Arabidopsis thaliana (sp|q9ca73|pp119_arath : 390.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g115800.1.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00262470 OTP85 Pentatricopeptide repeat-containing protein At2g02980,... 0.03 OrthoFinder output from all 47 species
AT1G05750 PDE247, CLB19 Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 OrthoFinder output from all 47 species
AT1G16480 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 OrthoFinder output from all 47 species
AT1G74600 No alias pentatricopeptide (PPR) repeat-containing protein 0.01 OrthoFinder output from all 47 species
Adi_g003135 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g003774 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g003790 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g004975 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g033689 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g049577 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g053713 OTP82 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g066083 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g069197 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g075417 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g087678 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g098725 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27830 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04207 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g15480 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g38565 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene03740.t1 Aspi01Gene03740 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene04901.t1 Aspi01Gene04901 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene17592.t1 Aspi01Gene17592 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene28263.t1 CRR22, Aspi01Gene28263 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene31476.t1 Aspi01Gene31476 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0003.g007938 No alias not classified & original description: CDS=1-4179 0.03 OrthoFinder output from all 47 species
Azfi_s0009.g011983 No alias not classified & original description: CDS=1-2745 0.03 OrthoFinder output from all 47 species
Azfi_s0009.g012008 EMB2758 not classified & original description: CDS=1-2031 0.02 OrthoFinder output from all 47 species
Azfi_s0028.g023827 No alias not classified & original description: CDS=1-3255 0.02 OrthoFinder output from all 47 species
Azfi_s0035.g025537 No alias ssDNA-binding protein *(OSB) & original description: CDS=167-2242 0.02 OrthoFinder output from all 47 species
Azfi_s0035.g025669 No alias not classified & original description: CDS=1-1770 0.02 OrthoFinder output from all 47 species
Azfi_s0039.g026394 OTP86 not classified & original description: CDS=1-2238 0.02 OrthoFinder output from all 47 species
Azfi_s0049.g030899 No alias not classified & original description: CDS=1-2946 0.02 OrthoFinder output from all 47 species
Azfi_s0057.g034255 No alias not classified & original description: CDS=1-2025 0.03 OrthoFinder output from all 47 species
Azfi_s0062.g035166 No alias not classified & original description: CDS=1-3372 0.02 OrthoFinder output from all 47 species
Azfi_s0141.g051350 No alias not classified & original description: CDS=124-2304 0.01 OrthoFinder output from all 47 species
Azfi_s0151.g053374 No alias ssDNA-binding protein *(OSB) & original description: CDS=217-2670 0.03 OrthoFinder output from all 47 species
Azfi_s0154.g053510 No alias not classified & original description: CDS=1-2550 0.02 OrthoFinder output from all 47 species
Azfi_s0162.g054179 No alias not classified & original description: CDS=1-2562 0.02 OrthoFinder output from all 47 species
Azfi_s0175.g055972 OTP86 not classified & original description: CDS=1-2742 0.02 OrthoFinder output from all 47 species
Azfi_s0242.g059832 No alias not classified & original description: CDS=1-2646 0.02 OrthoFinder output from all 47 species
Azfi_s0257.g060586 No alias not classified & original description: CDS=1-3168 0.02 OrthoFinder output from all 47 species
Azfi_s0371.g067098 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2013 0.02 OrthoFinder output from all 47 species
Azfi_s0425.g069243 No alias not classified & original description: CDS=144-3230 0.02 OrthoFinder output from all 47 species
Cba_g10212 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29871 CRR2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.25G042100.1 Ceric.25G042100 not classified & original description: pacid=50593153... 0.02 OrthoFinder output from all 47 species
Dac_g07560 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g08335 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g33204 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g44564 REME1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g04434 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g04453 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g10840 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g19684 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g23896 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g51448 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01036207001 OTP82 Pentatricopeptide repeat-containing protein At5g66520... 0.04 OrthoFinder output from all 47 species
Len_g37271 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g43657 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06245 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07756 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_100287g0010 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
Msp_g16214 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g04945 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07710 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g15708 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g17003 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g05131 OTP82 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g12577 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13595 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13627 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g19854 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Ppi_g01948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06906 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g07461 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09492 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g10206 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g12706 REME1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g17170 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g17397 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g22255 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g31236 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g43260 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53730 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56301 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g57497 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g63789 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000612 No alias not classified & original description: CDS=302-3289 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003208 No alias monogalactosyldiacylglycerol lipase *(HIL1) & original... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004577 No alias not classified & original description: CDS=1-1743 0.01 OrthoFinder output from all 47 species
Sam_g18488 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26489 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g26571 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g35776 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g39629 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40435 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo133320 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Smo71785 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Spa_g44644 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e039026_P001 OTP82, Zm00001e039026 Pentatricopeptide repeat-containing protein At5g48910... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 127 175
IPR002885 Pentatricopeptide_repeat 318 342
IPR002885 Pentatricopeptide_repeat 233 260
IPR002885 Pentatricopeptide_repeat 203 229
IPR002885 Pentatricopeptide_repeat 283 309
No external refs found!