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  5. Solyc03g119190.3.1

Solyc03g119190.3.1 (Solyc03g119190)


Aliases : Solyc03g119190

Description : ER-associated protein (Reticulon)


Gene families : OG0000272 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000272_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g119190.3.1
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00221140 evm_27.TU.AmTr_v1... Reticulon-like protein B9 OS=Arabidopsis thaliana 0.11 OrthoFinder output from all 47 species
AT1G68230 No alias Reticulon family protein 0.22 OrthoFinder output from all 47 species
AT3G18260 No alias Reticulon family protein 0.24 OrthoFinder output from all 47 species
Adi_g015887 No alias ER-tubule curvature-inducing protein *(Reticulon) &... 0.02 OrthoFinder output from all 47 species
Ala_g24666 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g42757 No alias ER-tubule curvature-inducing protein *(Reticulon) &... 0.02 OrthoFinder output from all 47 species
Als_g43655 RTNLB2, BTI2 ER-tubule curvature-inducing protein *(Reticulon) &... 0.03 OrthoFinder output from all 47 species
Azfi_s0037.g026028 RTNLB2, BTI2 ER-tubule curvature-inducing protein *(Reticulon) &... 0.03 OrthoFinder output from all 47 species
Cba_g22115 RTNLB2, BTI2 ER-tubule curvature-inducing protein *(Reticulon) &... 0.04 OrthoFinder output from all 47 species
Ceric.19G012300.1 Ceric.19G012300 ER-tubule curvature-inducing protein *(Reticulon) &... 0.04 OrthoFinder output from all 47 species
Dcu_g14887 RTNLB2, BTI2 ER-tubule curvature-inducing protein *(Reticulon) &... 0.03 OrthoFinder output from all 47 species
Dcu_g36852 BTI1, RTNLB1 ER-tubule curvature-inducing protein *(Reticulon) &... 0.03 OrthoFinder output from all 47 species
Dde_g49439 No alias ER-tubule curvature-inducing protein *(Reticulon) &... 0.03 OrthoFinder output from all 47 species
Ehy_g13025 No alias ER-tubule curvature-inducing protein *(Reticulon) &... 0.02 OrthoFinder output from all 47 species
GSVIVT01008336001 No alias Reticulon-like protein B9 OS=Arabidopsis thaliana 0.22 OrthoFinder output from all 47 species
GSVIVT01011845001 No alias Reticulon-like protein B9 OS=Arabidopsis thaliana 0.23 OrthoFinder output from all 47 species
GSVIVT01015864001 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os01g04640.1 LOC_Os01g04640 ER-associated protein (Reticulon) 0.06 OrthoFinder output from all 47 species
LOC_Os01g49660.1 LOC_Os01g49660 ER-associated protein (Reticulon) 0.06 OrthoFinder output from all 47 species
LOC_Os01g63240.1 LOC_Os01g63240 ER-associated protein (Reticulon) 0.03 OrthoFinder output from all 47 species
LOC_Os05g24770.1 BTI1, RTNLB1,... ER-associated protein (Reticulon) 0.03 OrthoFinder output from all 47 species
Len_g56590 No alias ER-tubule curvature-inducing protein *(Reticulon) &... 0.02 OrthoFinder output from all 47 species
Lfl_g22278 RTNLB2, BTI2 ER-tubule curvature-inducing protein *(Reticulon) &... 0.02 OrthoFinder output from all 47 species
Lfl_g27211 RTNLB2, BTI2 ER-tubule curvature-inducing protein *(Reticulon) &... 0.03 OrthoFinder output from all 47 species
MA_10432084g0010 No alias ER-associated protein (Reticulon) 0.03 OrthoFinder output from all 47 species
MA_654072g0010 No alias ER-associated protein (Reticulon) 0.12 OrthoFinder output from all 47 species
Nbi_g04608 RTNLB2, BTI2 ER-tubule curvature-inducing protein *(Reticulon) &... 0.03 OrthoFinder output from all 47 species
Pir_g08744 RTNLB2, BTI2 ER-tubule curvature-inducing protein *(Reticulon) &... 0.02 OrthoFinder output from all 47 species
Pir_g24694 No alias ER-tubule curvature-inducing protein *(Reticulon) &... 0.02 OrthoFinder output from all 47 species
Ppi_g01858 RTNLB2, BTI2 ER-tubule curvature-inducing protein *(Reticulon) &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012702 BTI1, RTNLB1 ER-tubule curvature-inducing protein *(Reticulon) &... 0.03 OrthoFinder output from all 47 species
Spa_g02967 No alias ER-tubule curvature-inducing protein *(Reticulon) &... 0.05 OrthoFinder output from all 47 species
Spa_g51559 No alias ER-tubule curvature-inducing protein *(Reticulon) &... 0.05 OrthoFinder output from all 47 species
Spa_g56482 RTNLB3 ER-tubule curvature-inducing protein *(Reticulon) &... 0.04 OrthoFinder output from all 47 species
Zm00001e014238_P002 RTNLB2, BTI2,... ER-associated protein (Reticulon) 0.04 OrthoFinder output from all 47 species
Zm00001e028102_P001 Zm00001e028102 ER-associated protein (Reticulon) 0.08 OrthoFinder output from all 47 species
Zm00001e032328_P001 Zm00001e032328 ER-associated protein (Reticulon) 0.14 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005985 sucrose metabolic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
MF GO:0016157 sucrose synthase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
InterPro domains Description Start Stop
IPR003388 Reticulon 34 189
No external refs found!