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  5. Solyc03g119540.3.1

Solyc03g119540.3.1 (Solyc03g119540)


Aliases : Solyc03g119540

Description : transcription factor (BBX-CO)


Gene families : OG0001051 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001051_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g119540.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00073p00061640 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
AT1G68520 No alias B-box type zinc finger protein with CCT domain 0.03 OrthoFinder output from all 47 species
Adi_g062463 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g099497 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g100906 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g24424 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g17463 No alias BBX class-III transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g31393 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g01431 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g04399 No alias CMF transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g09765 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene16706.t1 Aspi01Gene16706 CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.08G070500.1 Ceric.08G070500 BBX class-III transcription factor & original... 0.08 OrthoFinder output from all 47 species
Dcu_g23913 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09039 No alias BBX class-III transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01003983001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
GSVIVT01024661001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 OrthoFinder output from all 47 species
Len_g09104 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
MA_10428386g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_96860g0010 CIA2 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Msp_g37830 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g47217 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g14113 No alias BBX class-III transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g24194 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16447 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g18512 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g09176 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12347 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13174 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g53897 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06036 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g13911 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e030952_P002 Zm00001e030952 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000315 Znf_B-box 17 60
IPR010402 CCT_domain 349 391
No external refs found!