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  5. Solyc03g120710.2.1

Solyc03g120710.2.1 (Solyc03g120710)


Aliases : Solyc03g120710

Description : no hits & (original description: none)


Gene families : OG0001442 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001442_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g120710.2.1
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00215910 evm_27.TU.AmTr_v1... Cell wall.cellulose.synthesis.cellulose synthase complex... 0.02 OrthoFinder output from all 47 species
AT1G45688 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.19 OrthoFinder output from all 47 species
AT3G08490 No alias BEST Arabidopsis thaliana protein match is: Late... 0.07 OrthoFinder output from all 47 species
AT3G24605 No alias No description available 0.02 OrthoFinder output from all 47 species
Aev_g07747 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g16993 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04264 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g00399 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g12485 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g59912 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07489 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G076700.1 Ceric.01G076700 not classified & original description: pacid=50591443... 0.1 OrthoFinder output from all 47 species
Ceric.24G024200.1 Ceric.24G024200 not classified & original description: pacid=50628716... 0.04 OrthoFinder output from all 47 species
Ceric.31G048500.1 Ceric.31G048500 not classified & original description: pacid=50574815... 0.03 OrthoFinder output from all 47 species
Dac_g09294 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g25242 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g03465 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01017064001 No alias No description available 0.06 OrthoFinder output from all 47 species
Gb_09110 No alias microtubule-interacting component CC of cellulose... 0.04 OrthoFinder output from all 47 species
Gb_38619 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os04g59330.1 LOC_Os04g59330 microtubule-interacting component CC of cellulose... 0.09 OrthoFinder output from all 47 species
Mp7g12850.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g09919 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16812 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g20061 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g32935 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g01283 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g03471 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g08298 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g14708 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g02766 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0086.g018396 No alias not classified & original description: CDS=285-692 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0114.g020916 No alias not classified & original description: CDS=279-1298 0.04 OrthoFinder output from all 47 species
Sam_g08818 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo75450 No alias No description available 0.06 OrthoFinder output from all 47 species
Solyc04g078750.3.1 Solyc04g078750 microtubule-interacting component CC of cellulose... 0.04 OrthoFinder output from all 47 species
Spa_g11273 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g24382 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g47162 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06455 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007480_P002 Zm00001e007480 microtubule-interacting component CC of cellulose... 0.05 OrthoFinder output from all 47 species
Zm00001e030085_P001 Zm00001e030085 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004568 chitinase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006022 aminoglycan metabolic process IEP HCCA
BP GO:0006026 aminoglycan catabolic process IEP HCCA
BP GO:0006030 chitin metabolic process IEP HCCA
BP GO:0006032 chitin catabolic process IEP HCCA
BP GO:0006040 amino sugar metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010215 cellulose microfibril organization IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
CC GO:0031225 obsolete anchored component of membrane IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0046348 amino sugar catabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901071 glucosamine-containing compound metabolic process IEP HCCA
BP GO:1901072 glucosamine-containing compound catabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004864 LEA_2 185 288
No external refs found!