Solyc03g123730.4.1 (RPT1A, Solyc03g123730)

Aliases : RPT1A, Solyc03g123730

Description : regulatory component RPT1 of 26S proteasome

Gene families : OG0004346 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004346_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g123730.4.1

Target	Alias	Description	ECC score	Gene Family Method
AT1G53750	RPT1A	regulatory particle triple-A 1A	0.03	OrthoFinder output from all 47 species
Aev_g11650	RPT1A	regulatory component *(RPT1) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species
Aop_g01687	RPT1A	regulatory component *(RPT1) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species
Ceric.30G008600.1	RPT1A, Ceric.30G008600	regulatory component *(RPT1) of 26S proteasome &...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021464.16	RPT1A	Protein degradation.26S proteasome.regulatory...	0.01	OrthoFinder output from all 47 species
Cre14.g625400	RPT1A	Protein degradation.26S proteasome.regulatory...	0.06	OrthoFinder output from all 47 species
Dcu_g01171	RPT1A	regulatory component *(RPT1) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
LOC_Os02g54340.1	RPT1A, LOC_Os02g54340	regulatory component RPT1 of 26S proteasome	0.04	OrthoFinder output from all 47 species
LOC_Os06g09290.2	RPT1A, LOC_Os06g09290	regulatory component RPT1 of 26S proteasome	0.03	OrthoFinder output from all 47 species
Mp2g04840.1	RPT1A	regulatory component RPT1 of 26S proteasome	0.03	OrthoFinder output from all 47 species
Zm00001e023743_P001	RPT1A, Zm00001e023743	regulatory component RPT1 of 26S proteasome	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030118	clathrin coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030125	clathrin vesicle coat	IEP	HCCA
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEP	HCCA
CC	GO:0030132	clathrin coat of coated pit	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR041569	AAA_lid_3	362	405
IPR003959	ATPase_AAA_core	207	339

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