1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc04g007210.3.1

Solyc04g007210.3.1 (Solyc04g007210)


Aliases : Solyc04g007210

Description : transcription factor (BBX-CO)


Gene families : OG0001051 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001051_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g007210.3.1
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00156240 CIA2,... RNA biosynthesis.transcriptional activation.C2C2... 0.04 OrthoFinder output from all 47 species
AMTR_s00073p00061640 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.04 OrthoFinder output from all 47 species
AT1G25440 No alias B-box type zinc finger protein with CCT domain 0.05 OrthoFinder output from all 47 species
AT1G68520 No alias B-box type zinc finger protein with CCT domain 0.05 OrthoFinder output from all 47 species
Adi_g021795 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05448 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g24424 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g31393 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene16706.t2 Aspi01Gene16706 CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0172.g055744 No alias not classified & original description: CDS=1-1599 0.03 OrthoFinder output from all 47 species
Cba_g20220 No alias BBX class-III transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g20875 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09039 No alias BBX class-III transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011897001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.05 OrthoFinder output from all 47 species
GSVIVT01024661001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.07 OrthoFinder output from all 47 species
LOC_Os02g49880.1 LOC_Os02g49880 transcription factor (BBX-CO) 0.04 OrthoFinder output from all 47 species
LOC_Os03g50310.1 LOC_Os03g50310 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Mp3g19670.1 No alias transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007602 No alias not classified & original description: CDS=193-1710 0.02 OrthoFinder output from all 47 species
Smo141010 COL3, ATCOL3 RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
Zm00001e015732_P002 Zm00001e015732 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000315 Znf_B-box 16 59
IPR010402 CCT_domain 373 415
No external refs found!