Solyc04g007640.3.1 (Solyc04g007640)

Aliases : Solyc04g007640

Description : E3 ubiquitin ligase (PUB)

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc04g007640.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00030110	PUB15,...	U-box domain-containing protein 15 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AT1G23030	No alias	ARM repeat superfamily protein	0.07	OrthoFinder output from all 47 species
AT1G71020	No alias	ARM repeat superfamily protein	0.04	OrthoFinder output from all 47 species
Aev_g01975	PUB14, ATPUB14	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g03880	PUB12, AtPUB12	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g07750	PUB14, ATPUB14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g16654	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g01345	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0001.g000295	No alias	not classified & original description: CDS=1-2304	0.02	OrthoFinder output from all 47 species
Azfi_s0070.g036784	PUB13, ATPUB13	not classified & original description: CDS=1-531	0.04	OrthoFinder output from all 47 species
Azfi_s0579.g078276	PUB13, ATPUB13	E3 ubiquitin ligase & original description: CDS=173-2116	0.04	OrthoFinder output from all 47 species
Cba_g09348	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g43903	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g12067	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g07071	PUB13, ATPUB13	E3 ubiquitin ligase *(PUB15) & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g51928	PUB14, ATPUB14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g04784	ATPUB17, PUB17	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g02654	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g04978	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g22153	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01007275001	PUB9, ATPUB9	Protein degradation.peptide tagging.Ubiquitin...	0.04	OrthoFinder output from all 47 species
Gb_13754	PUB13, ATPUB13	E3 ubiquitin ligase (PUB)	0.04	OrthoFinder output from all 47 species
LOC_Os02g49950.1	LOC_Os02g49950	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
LOC_Os03g16824.1	PUB13, ATPUB13,...	E3 ubiquitin ligase (PUB)	0.04	OrthoFinder output from all 47 species
LOC_Os06g01304.1	PUB14, ATPUB14,...	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
LOC_Os08g37570.1	PUB15, LOC_Os08g37570	U-box domain-containing protein 15 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
LOC_Os12g38210.1	PUB13, ATPUB13,...	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Msp_g31758	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g32554	PUB12, AtPUB12	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g11295	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g11319	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g08627	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g26460	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Pp3c10_4480V3.1	ATPUB17, PUB17,...	plant U-box 13	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016119	PUB13, ATPUB13	E3 ubiquitin ligase & original description: CDS=1314-3077	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0117.g021169	No alias	not classified & original description: CDS=1-882	0.02	OrthoFinder output from all 47 species
Solyc09g056450.4.1	PUB9, ATPUB9,...	U-box domain-containing protein 9 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Spa_g11468	PUB14, ATPUB14	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Zm00001e013323_P001	PUB15, Zm00001e013323	U-box domain-containing protein 15 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e014566_P002	PUB9, ATPUB9,...	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Zm00001e018578_P001	Zm00001e018578	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Zm00001e023475_P001	Zm00001e023475	E3 ubiquitin ligase (PUB)	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004650	polygalacturonase activity	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	268	338
IPR000225	Armadillo	398	436
IPR000225	Armadillo	480	518

External Links

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Solyc04g007640.3.1 (Solyc04g007640)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation