Solyc04g007890.3.1 (HMGA, Solyc04g007890)

Aliases : HMGA, Solyc04g007890

Description : HMG-Y-related protein A OS=Arabidopsis thaliana (sp|q43386|hmgya_arath : 84.3)

Gene families : OG0012187 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0012187_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc04g007890.3.1
Cluster	HCCA: Cluster_58

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00091p00072780	evm_27.TU.AmTr_v1...	No description available	0.02	OrthoFinder output from all 47 species
AT1G14900	HMGA	high mobility group A	0.07	OrthoFinder output from all 47 species
Dcu_g23188	HIS1-3	chromatin architectural modulator *(HMGA) & original...	0.05	OrthoFinder output from all 47 species
GSVIVT01011701001	HMGA	HMG-Y-related protein A OS=Zea mays	0.04	OrthoFinder output from all 47 species
LOC_Os08g33190.1	HMGA, LOC_Os08g33190	HMG-Y-related protein A OS=Zea mays...	0.04	OrthoFinder output from all 47 species
LOC_Os09g23730.1	HMGA, LOC_Os09g23730	HMG-Y-related protein A OS=Zea mays...	0.03	OrthoFinder output from all 47 species
Zm00001e004163_P001	HMGA, Zm00001e004163	HMG-Y-related protein A OS=Zea mays...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	IEA	Interproscan
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
CC	GO:0018995	host cellular component	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
BP	GO:0043933	protein-containing complex organization	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR005818	Histone_H1/H5_H15	11	72
IPR017956	AT_hook_DNA-bd_motif	160	171
IPR017956	AT_hook_DNA-bd_motif	104	114
IPR017956	AT_hook_DNA-bd_motif	136	145
IPR017956	AT_hook_DNA-bd_motif	85	92

External Links

No external refs found!

Solyc04g007890.3.1 (HMGA, Solyc04g007890)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation