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  5. Solyc04g014820.4.1

Solyc04g014820.4.1 (Solyc04g014820)


Aliases : Solyc04g014820

Description : Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana (sp|q8w034|rnp1_arath : 206.0)


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g014820.4.1
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00088p00174110 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.09 OrthoFinder output from all 47 species
AT4G26650 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 OrthoFinder output from all 47 species
AT5G47620 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 OrthoFinder output from all 47 species
Adi_g017512 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g054784 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g056344 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g059746 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g081639 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cre07.g330300 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g15186 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g19867 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g13117 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g07737 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02189 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05225 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g37554 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc07g048030.4.1 Solyc07g048030 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 6 73
IPR000504 RRM_dom 104 161
No external refs found!