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  5. Solyc04g015450.3.1

Solyc04g015450.3.1 (Solyc04g015450)


Aliases : Solyc04g015450

Description : Translation factor GUF1 homolog, chloroplastic OS=Populus trichocarpa (sp|b9gha6|gufp_poptr : 1077.0)


Gene families : OG0002290 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002290_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g015450.3.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00109510 evm_27.TU.AmTr_v1... Translation factor GUF1 homolog, chloroplastic OS=Vitis vinifera 0.09 OrthoFinder output from all 47 species
AT5G08650 No alias Small GTP-binding protein 0.2 OrthoFinder output from all 47 species
Adi_g116309 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g02382 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g09651 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g02197 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g04580 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Azfi_s0072.g036902 No alias not classified & original description: CDS=1-1971 0.07 OrthoFinder output from all 47 species
Cba_g17085 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.02G059400.1 Ceric.02G059400 not classified & original description: pacid=50584081... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000912.22 No alias Translation factor GUF1 homolog, chloroplastic... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021127.140 No alias Translation factor GUF1 homolog, mitochondrial OS=Sorghum bicolor 0.02 OrthoFinder output from all 47 species
Cre03.g165000 No alias Translation factor GUF1 homolog, chloroplastic... 0.03 OrthoFinder output from all 47 species
Dac_g07140 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g11300 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Ehy_g10737 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01022409001 No alias Translation factor GUF1 homolog, chloroplastic OS=Vitis vinifera 0.19 OrthoFinder output from all 47 species
LOC_Os02g06300.1 LOC_Os02g06300 Translation factor GUF1 homolog, chloroplastic OS=Oryza... 0.21 OrthoFinder output from all 47 species
Len_g04338 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g03115 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Mp7g18810.1 No alias Translation factor GUF1 homolog, chloroplastic OS=Vitis... 0.08 OrthoFinder output from all 47 species
Msp_g11300 No alias not classified & original description: none 0.13 OrthoFinder output from all 47 species
Nbi_g19015 No alias not classified & original description: none 0.13 OrthoFinder output from all 47 species
Ore_g09462 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g09463 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g18021 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Pnu_g10075 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g43097 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39971 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Smo407721 No alias Translation factor GUF1 homolog, chloroplastic OS=Oryza... 0.04 OrthoFinder output from all 47 species
Spa_g04229 No alias not classified & original description: none 0.14 OrthoFinder output from all 47 species
Tin_g01086 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Zm00001e025200_P002 Zm00001e025200 Translation factor GUF1 homolog, chloroplastic OS=Oryza... 0.15 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006536 glutamate metabolic process IEP HCCA
BP GO:0006537 glutamate biosynthetic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
MF GO:0015930 glutamate synthase activity IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
BP GO:0017038 protein import IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0043650 dicarboxylic acid biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR013842 LepA_CTD 569 675
IPR004161 EFTu-like_2 286 356
IPR000640 EFG_V-like 480 566
IPR000795 T_Tr_GTP-bd_dom 85 262
No external refs found!