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  5. Solyc04g039850.1.1

Solyc04g039850.1.1 (ATPB, PB, Solyc04g039850)


Aliases : ATPB, PB, Solyc04g039850

Description : ATP synthase subunit beta, chloroplastic OS=Agapanthus africanus (sp|q95dr6|atpb_agaaf : 219.0)


Gene families : OG0000973 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000973_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g039850.1.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272630 ATPB, PB,... ATP synthase subunit beta, chloroplastic OS=Amborella trichopoda 0.03 OrthoFinder output from all 47 species
AMTR_s00334p00013670 ATPB, PB,... Photosynthesis.photophosphorylation.ATP synthase... 0.07 OrthoFinder output from all 47 species
ATCG00480 ATPB, PB ATP synthase subunit beta 0.03 OrthoFinder output from all 47 species
Aev_g10806 ATPB, PB subunit beta of peripheral CF1 subcomplex of ATP... 0.03 OrthoFinder output from all 47 species
Als_g61401 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cre17.g698000 No alias Cellular respiration.oxidative phosphorylation.ATP... 0.01 OrthoFinder output from all 47 species
Dcu_g20874 ATPB, PB subunit beta of peripheral CF1 subcomplex of ATP... 0.03 OrthoFinder output from all 47 species
LOC_Os05g35320.1 ATPB, PB, LOC_Os05g35320 ATP synthase subunit beta, chloroplastic OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
LOC_Os06g39740.1 ATPB, PB, LOC_Os06g39740 subunit beta of peripheral CF1 subcomplex of ATP synthase complex 0.03 OrthoFinder output from all 47 species
Lfl_g05507 ATPB, PB subunit beta of peripheral CF1 subcomplex of ATP... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010854 ATPB, PB not classified & original description: CDS=1-264 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEP HCCA
BP GO:0006022 aminoglycan metabolic process IEP HCCA
BP GO:0006026 aminoglycan catabolic process IEP HCCA
BP GO:0006030 chitin metabolic process IEP HCCA
BP GO:0006032 chitin catabolic process IEP HCCA
BP GO:0006040 amino sugar metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046348 amino sugar catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901071 glucosamine-containing compound metabolic process IEP HCCA
BP GO:1901072 glucosamine-containing compound catabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR000194 ATPase_F1/V1/A1_a/bsu_nucl-bd 53 129
No external refs found!