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  5. Solyc04g071160.3.1

Solyc04g071160.3.1 (SUE3, VIP1, Solyc04g071160)


Aliases : SUE3, VIP1, Solyc04g071160

Description : transcription factor (bZIP)


Gene families : OG0000155 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000155_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g071160.3.1
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00190730 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bZIP... 0.04 OrthoFinder output from all 47 species
AT1G43700 SUE3, VIP1 VIRE2-interacting protein 1 0.02 OrthoFinder output from all 47 species
Adi_g077163 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06005 No alias bZIP class-I transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g08187 ATBZIP34, BZIP34 bZIP class-L transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g17398 No alias bZIP class-I transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene31324.t1 Aspi01Gene31324 bZIP class-I transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g03942 No alias bZIP class-I transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g78042 ATBZIP61, BZIP61 bZIP class-L transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.18G057800.1 Ceric.18G057800 bZIP class-I transcription factor & original... 0.04 OrthoFinder output from all 47 species
Dcu_g03872 No alias bZIP class-I transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07611 No alias bZIP class-I transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g03394 No alias bZIP class-L transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g28477 No alias bZIP class-I transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09495 No alias bZIP class-I transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g02436 No alias bZIP class-I transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g11626 No alias bZIP class-I transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g01054 No alias bZIP class-I transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001113 No alias bZIP class-I transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005801 No alias bZIP class-I transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sam_g18152 No alias bZIP class-I transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g103873.1.1 Solyc01g103873 transcription factor (bZIP) 0.03 OrthoFinder output from all 47 species
Spa_g22042 No alias bZIP class-I transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54986 No alias bZIP class-I transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000201_P001 Zm00001e000201 transcription factor (bZIP) 0.02 OrthoFinder output from all 47 species
Zm00001e018460_P001 SUE3, VIP1,... transcription factor (bZIP) 0.02 OrthoFinder output from all 47 species
Zm00001e024638_P002 SUE3, VIP1,... transcription factor (bZIP) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004827 bZIP 184 242
No external refs found!