Solyc04g076430.3.1 (ATRGTA1, RGTA1, Solyc04g076430)

Aliases : ATRGTA1, RGTA1, Solyc04g076430

Description : subunit alpha of RAB-GTPase geranylgeranyltransferase (RGT) complex

Gene families : OG0004280 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004280_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc04g076430.3.1
Cluster	HCCA: Cluster_33

Target	Alias	Description	ECC score	Gene Family Method
AT4G24490	ATRGTA1, RGTA1	RAB geranylgeranyl transferase alpha subunit 1	0.07	OrthoFinder output from all 47 species
Ceric.01G053200.1	ATRGTA1, RGTA1,...	EC_2.5 transferase transferring alkyl or aryl group,...	0.05	OrthoFinder output from all 47 species
Dac_g01605	ATRGTA1, RGTA1	EC_2.5 transferase transferring alkyl or aryl group,...	0.03	OrthoFinder output from all 47 species
Dcu_g03999	ATRGTA1, RGTA1	EC_2.5 transferase transferring alkyl or aryl group,...	0.06	OrthoFinder output from all 47 species
GSVIVT01009190001	ATRGTA1, RGTA1	Vesicle trafficking.regulation of membrane tethering and...	0.06	OrthoFinder output from all 47 species
LOC_Os06g46380.1	RGTA2, ATRGTA2,...	subunit alpha of RAB-GTPase geranylgeranyltransferase...	0.06	OrthoFinder output from all 47 species
Len_g17135	ATRGTA1, RGTA1	EC_2.5 transferase transferring alkyl or aryl group,...	0.02	OrthoFinder output from all 47 species
Lfl_g06062	ATRGTA1, RGTA1	EC_2.5 transferase transferring alkyl or aryl group,...	0.03	OrthoFinder output from all 47 species
MA_48992g0010	ATRGTA1, RGTA1	subunit alpha of RAB-GTPase geranylgeranyltransferase...	0.01	OrthoFinder output from all 47 species
Msp_g11677	ATRGTA1, RGTA1	EC_2.5 transferase transferring alkyl or aryl group,...	0.03	OrthoFinder output from all 47 species
Zm00001e030328_P001	ATRGTA1, RGTA1,...	subunit alpha of RAB-GTPase geranylgeranyltransferase...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004659	prenyltransferase activity	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008318	protein prenyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	None	Extended
BP	GO:0018342	protein prenylation	IEA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0097354	prenylation	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0005092	GDP-dissociation inhibitor activity	IEP	HCCA
CC	GO:0005789	endoplasmic reticulum membrane	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0007264	small GTPase mediated signal transduction	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0018279	protein N-linked glycosylation via asparagine	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
MF	GO:0032977	membrane insertase activity	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140597	protein carrier chaperone	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002088	Prenyl_trans_a	208	235
IPR002088	Prenyl_trans_a	127	151
IPR002088	Prenyl_trans_a	162	189
IPR002088	Prenyl_trans_a	92	119
IPR002088	Prenyl_trans_a	45	71

External Links

No external refs found!

Solyc04g076430.3.1 (ATRGTA1, RGTA1, Solyc04g076430)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation