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  5. Solyc04g078690.3.1

Solyc04g078690.3.1 (SPT, Solyc04g078690)


Aliases : SPT, Solyc04g078690

Description : transcription factor (bHLH)


Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g078690.3.1

Target Alias Description ECC score Gene Family Method Actions
AT4G02590 UNE12 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g053074 ATRSL1, RSL1 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g056779 ATRSL1, RSL1 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g079197 ATRSL1, RSL1 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g103433 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06685 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06739 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g14326 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Aev_g23312 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08145 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Aop_g29424 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene09999.t1 Aspi01Gene09999 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene46366.t1 HEC2, Aspi01Gene46366 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0038.g026209 No alias bHLH-type transcription factor & original description:... 0.08 OrthoFinder output from all 47 species
Azfi_s0075.g037605 LRL3 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Cba_g35134 LRL3 bHLH-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Ceric.17G001900.1 CIB1, Ceric.17G001900 regulatory protein (CIB) of blue light perception &... 0.05 OrthoFinder output from all 47 species
Ceric.20G088200.1 RHD6, Ceric.20G088200 bHLH-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.22G021400.1 CIB5, Ceric.22G021400 regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Dac_g33129 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g06081 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g19533 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Dcu_g25890 RHD6 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g51679 HEC2 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g08656 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09150 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18466 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01032055001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
LOC_Os09g32510.1 LOC_Os09g32510 transcription factor (bHLH). transcriptional regulator (CIB) 0.06 OrthoFinder output from all 47 species
Len_g13668 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g37679 RHD6 LHW/LHL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g03024 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g00901 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06737 SPT bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g09354 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Nbi_g14714 HEC1 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g26145 BPEp, ZCW32, BPE, BPEub regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Ore_g33206 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Ore_g37088 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g01951 UNE12 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g33476 RSL2 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g63739 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0142.g022819 PIL5, PIF1 bHLH-type transcription factor & original description: CDS=1-1485 0.05 OrthoFinder output from all 47 species
Sam_g50588 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g086870.3.1 Solyc01g086870 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Solyc02g070880.1.1 Solyc02g070880 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Solyc07g005400.3.1 LRL1, Solyc07g005400 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
Spa_g21021 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g37930 No alias regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Spa_g39495 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g41479 RSL2 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g57226 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e016117_P001 LRL2, Zm00001e016117 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
Zm00001e018946_P001 Zm00001e018946 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e022005_P003 Zm00001e022005 transcription factor (bHLH). transcriptional regulator (CIB) 0.04 OrthoFinder output from all 47 species
Zm00001e023698_P001 LRL3, Zm00001e023698 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
CC GO:0005666 RNA polymerase III complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006383 transcription by RNA polymerase III IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 138 184
No external refs found!