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  5. Solyc04g078750.3.1

Solyc04g078750.3.1 (Solyc04g078750)


Aliases : Solyc04g078750

Description : microtubule-interacting component CC of cellulose synthase complex


Gene families : OG0001442 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001442_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g078750.3.1
Cluster HCCA: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00215910 evm_27.TU.AmTr_v1... Cell wall.cellulose.synthesis.cellulose synthase complex... 0.05 OrthoFinder output from all 47 species
AMTR_s00109p00054230 evm_27.TU.AmTr_v1... Cell wall.cellulose.synthesis.cellulose synthase complex... 0.02 OrthoFinder output from all 47 species
AT1G45688 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.09 OrthoFinder output from all 47 species
AT3G08490 No alias BEST Arabidopsis thaliana protein match is: Late... 0.03 OrthoFinder output from all 47 species
Adi_g007986 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g103178 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g01600 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07007 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene22107.t1 Aspi01Gene22107 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07489 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.01G076700.1 Ceric.01G076700 not classified & original description: pacid=50591443... 0.03 OrthoFinder output from all 47 species
Ceric.24G024200.1 Ceric.24G024200 not classified & original description: pacid=50628716... 0.05 OrthoFinder output from all 47 species
Ceric.31G048500.1 Ceric.31G048500 not classified & original description: pacid=50574815... 0.03 OrthoFinder output from all 47 species
Dac_g09294 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g25242 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g00454 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g05823 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03465 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01017064001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_38619 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os02g44740.1 LOC_Os02g44740 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os04g59330.1 LOC_Os04g59330 microtubule-interacting component CC of cellulose... 0.04 OrthoFinder output from all 47 species
Len_g08351 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_8816169g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp7g12850.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Ore_g09919 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29304 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01283 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g43410 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03471 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g08298 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g14708 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c16_7260V3.1 Pp3c16_7260 Late embryogenesis abundant (LEA) hydroxyproline-rich... 0.02 OrthoFinder output from all 47 species
Ppi_g02766 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g02992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g08763 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g08818 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g120710.2.1 Solyc03g120710 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e007480_P002 Zm00001e007480 microtubule-interacting component CC of cellulose... 0.08 OrthoFinder output from all 47 species
Zm00001e008104_P001 Zm00001e008104 microtubule-interacting component CC of cellulose... 0.03 OrthoFinder output from all 47 species
Zm00001e030085_P001 Zm00001e030085 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015095 magnesium ion transmembrane transporter activity IEP HCCA
BP GO:0015693 magnesium ion transport IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
CC GO:0048046 apoplast IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004864 LEA_2 196 292
No external refs found!