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  5. Solyc04g079410.3.1

Solyc04g079410.3.1 (Solyc04g079410)


Aliases : Solyc04g079410

Description : ssDNA-binding protein (OSB)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g079410.3.1
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00256920 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
Adi_g003861 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g004274 LPA66 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034782 LPA66 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036486 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g044806 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g049842 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067156 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067964 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g068858 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g078542 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g080646 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g095461 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101174 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g110083 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g07948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g46569 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02649 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g12452 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g13481 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g26450 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05057 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05667 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05718 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g06359 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06911 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07129 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g12661 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18669 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g32548 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g56368 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g58396 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05250 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g11891 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g12840 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene16353.t1 Aspi01Gene16353 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene22967.t2 Aspi01Gene22967 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene64477.t1 OTP82, Aspi01Gene64477 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0808.g087728 CRR22 not classified & original description: CDS=1-2094 0.03 OrthoFinder output from all 47 species
Cba_g03367 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g03404 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g10344 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g10642 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g17193 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20428 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g22397 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g34428 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g77187 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.30G071100.1 Ceric.30G071100 not classified & original description: pacid=50608720... 0.03 OrthoFinder output from all 47 species
Dac_g28478 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g35260 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g42997 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g06340 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07831 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08804 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08840 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g16811 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g17280 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17298 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g35692 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38628 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g42644 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g46171 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g50973 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g03462 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g06677 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g26159 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g14560 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g14704 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15996 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g24725 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26389 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_00776 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.02 OrthoFinder output from all 47 species
Len_g42306 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g02854 OSB4 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05475 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05665 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07783 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g11093 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12344 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g14701 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g15216 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g16404 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g25612 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g25656 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g25864 OSB4 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
MA_8893194g0010 MEF1 RNA editing factor (MEF1) 0.02 OrthoFinder output from all 47 species
Msp_g03763 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g06342 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g33650 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g19491 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g22004 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g23872 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g24045 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g03367 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16060 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25355 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44143 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g02574 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11772 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12824 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13570 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g16067 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g18895 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g19619 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57507 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57666 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57697 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g59227 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g60210 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63492 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63818 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g65274 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g66518 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g03120 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16135 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23094 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30084 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05910 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g06281 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06822 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g07527 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07585 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13846 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14215 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16308 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17174 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18941 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g29380 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g31163 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g32250 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g39260 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g48448 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53028 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53286 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53371 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53393 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53982 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g56808 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57817 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g60900 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61267 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002433 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0139.g022629 No alias not classified & original description: CDS=614-2965 0.02 OrthoFinder output from all 47 species
Sam_g15563 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27677 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29293 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37838 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo26969 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Spa_g15050 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g26166 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g28935 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56147 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04699 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08654 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g17470 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g23276 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g24970 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g26445 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g26528 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g27280 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g34873 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g35104 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g43830 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g43906 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45519 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR000424 Primosome_PriB/ssb 75 170
No external refs found!