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  5. Solyc04g079970.3.1

Solyc04g079970.3.1 (RCE1, Solyc04g079970)


Aliases : RCE1, Solyc04g079970

Description : RUB conjugation E2 protein (RCE1)


Gene families : OG0002378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002378_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g079970.3.1
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
AT2G18600 No alias Ubiquitin-conjugating enzyme family protein 0.02 OrthoFinder output from all 47 species
Adi_g009772 RCE1 E2 RUB ubiquitin-conjugating enzyme *(RCE1) & original... 0.02 OrthoFinder output from all 47 species
Adi_g115022 RCE1 E2 RUB ubiquitin-conjugating enzyme *(RCE1) & original... 0.03 OrthoFinder output from all 47 species
Als_g46164 No alias E2 RUB ubiquitin-conjugating enzyme *(RCE1) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene52321.t1 Aspi01Gene52321 E2 RUB ubiquitin-conjugating enzyme *(RCE1) & original... 0.02 OrthoFinder output from all 47 species
Cre08.g370850 RCE1 Protein degradation.peptide tagging.Related-to-Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01019018001 No alias Protein degradation.peptide tagging.Related-to-Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01031919001 RCE1 Protein degradation.peptide tagging.Related-to-Ubiquitin... 0.1 OrthoFinder output from all 47 species
Gb_16788 RCE1 RUB conjugation E2 protein (RCE1) 0.03 OrthoFinder output from all 47 species
Len_g04532 RCE1 E2 RUB ubiquitin-conjugating enzyme *(RCE1) & original... 0.05 OrthoFinder output from all 47 species
Mp2g16580.1 RCE1 RUB conjugation E2 protein (RCE1) 0.06 OrthoFinder output from all 47 species
Msp_g03811 RCE1 E2 RUB ubiquitin-conjugating enzyme *(RCE1) & original... 0.03 OrthoFinder output from all 47 species
Ore_g11784 RCE1 E2 RUB ubiquitin-conjugating enzyme *(RCE1) & original... 0.02 OrthoFinder output from all 47 species
Ore_g19611 RCE1 E2 RUB ubiquitin-conjugating enzyme *(RCE1) & original... 0.02 OrthoFinder output from all 47 species
Pir_g47784 RCE1 E2 RUB ubiquitin-conjugating enzyme *(RCE1) & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0205.g025716 RCE1 E2 RUB ubiquitin-conjugating enzyme *(RCE1) & original... 0.02 OrthoFinder output from all 47 species
Smo152152 RCE1 Protein degradation.peptide tagging.Related-to-Ubiquitin... 0.03 OrthoFinder output from all 47 species
Smo271739 RCE1 Protein degradation.peptide tagging.Related-to-Ubiquitin... 0.03 OrthoFinder output from all 47 species
Tin_g01525 RCE1 E2 RUB ubiquiTin-conjugaTing enzyme *(RCE1) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e013173_P001 RCE1, Zm00001e013173 RUB conjugation E2 protein (RCE1) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
InterPro domains Description Start Stop
IPR000608 UBQ-conjugat_E2 33 168
No external refs found!