Aliases : XRN3, AtXRN3, Solyc04g081280
Description : exoribonuclease (RAT1/XRN2)
Gene families : OG0000769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000769_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00025p00024460 | XRN3, AtXRN3,... | 5-3 exoribonuclease 3 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00491p00000370 | XRN3, AtXRN3,... | 5-3 exoribonuclease 3 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| AT1G54490 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease 4 | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g078672 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease *(XRN4) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g11412 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g15103 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Aop_g13654 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease *(XRN4) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene67537.t1 | EIN5, AIN1,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0149.g053258 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: CDS=205-3336 | 0.09 | OrthoFinder output from all 47 species | |
| Cba_g15355 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g16564 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease *(XRN4) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g45283 | XRN3, AtXRN3 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.30G049400.1 | XRN3, AtXRN3,... | exoribonuclease *(RAT1/XRN2) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g05069 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g06196 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01009879001 | XRN3, AtXRN3 | RNA biosynthesis.RNA polymerase II-dependent... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01021865001 | EIN5, AIN1, XRN4, ATXRN4 | RNA processing.RNA decay.deadenylation-dependent... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g58060.1 | EIN5, AIN1,... | EBF-modulating exoribonuclease (EIN5/XRN4).... | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g06753 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Lfl_g19229 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease *(XRN4) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| MA_10430844g0010 | XRN3, AtXRN3 | exoribonuclease (RAT1/XRN2) | 0.05 | OrthoFinder output from all 47 species | |
| MA_17503g0010 | XRN3, AtXRN3 | 5-3 exoribonuclease 3 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
| Mp3g08820.1 | XRN3, AtXRN3 | exoribonuclease (RAT1/XRN2) | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g13176 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g19704 | EIN5, AIN1, XRN4, ATXRN4 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g19708 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g40493 | XRN3, AtXRN3 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g01687 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease *(XRN4) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g07503 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g16080 | XRN3, AtXRN3 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g12064 | No alias | exoribonuclease *(RAT1/XRN2) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g38845 | No alias | exoribonuclease *(XRN4) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e011879_P001 | EIN5, AIN1,... | EBF-modulating exoribonuclease (EIN5/XRN4).... | 0.07 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| MF | GO:0004527 | exonuclease activity | IEA | Interproscan |
| MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003916 | DNA topoisomerase activity | IEP | HCCA |
| MF | GO:0003917 | DNA topoisomerase type I (single strand cut, ATP-independent) activity | IEP | HCCA |
| CC | GO:0005643 | nuclear pore | IEP | HCCA |
| BP | GO:0006265 | DNA topological change | IEP | HCCA |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | HCCA |
| BP | GO:0006996 | organelle organization | IEP | HCCA |
| MF | GO:0017056 | structural constituent of nuclear pore | IEP | HCCA |
| BP | GO:0051169 | nuclear transport | IEP | HCCA |
| BP | GO:0051276 | chromosome organization | IEP | HCCA |
| BP | GO:0071103 | DNA conformation change | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| No external refs found! |
