Solyc05g013050.3.1 (VTI12, VTI1B,...)

Aliases : VTI12, VTI1B, ATVTI12, Solyc05g013050

Description : VTI group Qb-type SNARE protein

Gene families : OG0002267 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002267_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc05g013050.3.1
Cluster	HCCA: Cluster_148

Target	Alias	Description	ECC score	Gene Family Method
Als_g22401	ATVTI13, VTI13	Qb-type VTI-group component of SNARE membrane fusion...	0.03	OrthoFinder output from all 47 species
Als_g25842	SGR4, ZIG1,...	Qb-type VTI-group component of SNARE membrane fusion...	0.03	OrthoFinder output from all 47 species
Azfi_s0002.g001214	SGR4, ZIG1,...	Qb-type VTI-group component of SNARE membrane fusion...	0.04	OrthoFinder output from all 47 species
Ceric.06G059500.1	SGR4, ZIG1,...	Qb-type VTI-group component of SNARE membrane fusion...	0.04	OrthoFinder output from all 47 species
Ceric.11G005300.1	ATVTI13, VTI13,...	Qb-type VTI-group component of SNARE membrane fusion...	0.03	OrthoFinder output from all 47 species
Dcu_g25235	SGR4, ZIG1,...	Qb-type VTI-group component of SNARE membrane fusion...	0.05	OrthoFinder output from all 47 species
GSVIVT01007964001	ATVTI13, VTI13	Vesicle trafficking.SNARE target membrane recognition...	0.05	OrthoFinder output from all 47 species
LOC_Os01g37980.1	ATVTI13, VTI13,...	VTI group Qb-type SNARE protein	0.05	OrthoFinder output from all 47 species
LOC_Os01g51120.1	ATVTI13, VTI13,...	VTI group Qb-type SNARE protein	0.06	OrthoFinder output from all 47 species
Nbi_g00258	ATVTI13, VTI13	Qb-type VTI-group component of SNARE membrane fusion...	0.03	OrthoFinder output from all 47 species
Nbi_g04578	SGR4, ZIG1,...	Qb-type VTI-group component of SNARE membrane fusion...	0.03	OrthoFinder output from all 47 species
Sam_g24606	No alias	Qb-type VTI-group component of SNARE membrane fusion...	0.02	OrthoFinder output from all 47 species
Zm00001e020013_P001	ATVTI13, VTI13,...	VTI group Qb-type SNARE protein	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	HCCA
BP	GO:0007034	vacuolar transport	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007705	Vesicle_trsprt_v-SNARE_N	12	90

External Links

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Solyc05g013050.3.1 (VTI12, VTI1B,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation