Aliases : AtTOP3alpha, TOP3A, Solyc05g014740
Description : DNA topoisomerase 3-alpha OS=Oryza sativa subsp. japonica (sp|c7j0a2|top3a_orysj : 231.0)
Gene families : OG0002141 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002141_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc05g014740.1.1 | |
| Cluster | HCCA: Cluster_151 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Azfi_s0288.g063246 | AtTOP3alpha, TOP3A | topoisomerase component *(TOP3-alpha) of RTR Holliday... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.15G013100.1 | AtTOP3alpha,... | topoisomerase component *(TOP3-alpha) of RTR Holliday... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01026461001 | AtTOP3alpha, TOP3A | DNA topoisomerase 3-alpha OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| MA_18230g0010 | AtTOP3alpha, TOP3A | DNA topoisomerase 3-alpha OS=Arabidopsis thaliana... | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0018.g007475 | No alias | type-1A topoisomerase TOP3b & original description: CDS=156-2795 | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEA | Interproscan |
| MF | GO:0003916 | DNA topoisomerase activity | IEA | Interproscan |
| BP | GO:0006265 | DNA topological change | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003682 | chromatin binding | IEP | HCCA |
| MF | GO:0004518 | nuclease activity | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| BP | GO:0006325 | chromatin organization | IEP | HCCA |
| BP | GO:0006338 | chromatin remodeling | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0031491 | nucleosome binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0044877 | protein-containing complex binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR013497 | Topo_IA_cen | 105 | 238 |
| No external refs found! |
