Aliases : Solyc05g016240
Description : mRNA decay factor (PAT1)
Gene families : OG0002686 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002686_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00155p00028780 | evm_27.TU.AmTr_v1... | Protein PAT1 homolog OS=Arabidopsis thaliana | 0.06 | OrthoFinder output from all 47 species | |
| AT1G79090 | No alias | FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... | 0.08 | OrthoFinder output from all 47 species | |
| AT4G14990 | No alias | Topoisomerase II-associated protein PAT1 | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g008921 | No alias | mRNA decay factor *(PAT1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g04164 | No alias | mRNA decay factor *(PAT1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g11197 | No alias | mRNA decay factor *(PAT1) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.32G051000.1 | Ceric.32G051000 | mRNA decay factor *(PAT1) & original description:... | 0.08 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00021357.9 | No alias | No description available | 0.02 | OrthoFinder output from all 47 species | |
| Cre06.g278203 | No alias | No description available | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01015721001 | No alias | Protein PAT1 homolog 1 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01020437001 | No alias | No description available | 0.06 | OrthoFinder output from all 47 species | |
| Gb_01548 | No alias | mRNA decay factor (PAT1) | 0.04 | OrthoFinder output from all 47 species | |
| Gb_36345 | No alias | mRNA decay factor (PAT1) | 0.03 | OrthoFinder output from all 47 species | |
| Len_g12300 | No alias | mRNA decay factor *(PAT1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_10426858g0010 | No alias | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| Mp4g14040.1 | No alias | mRNA decay factor (PAT1) | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g16038 | No alias | mRNA decay factor *(PAT1) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0010.g004917 | No alias | mRNA decay factor *(PAT1) & original description: CDS=1-2328 | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g13549 | No alias | mRNA decay factor *(PAT1) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g13550 | No alias | mRNA decay factor *(PAT1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Solyc12g006420.2.1 | Solyc12g006420 | mRNA decay factor (PAT1) | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005667 | transcription regulator complex | IEP | HCCA |
| CC | GO:0005669 | transcription factor TFIID complex | IEP | HCCA |
| BP | GO:0006352 | DNA-templated transcription initiation | IEP | HCCA |
| BP | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | IEP | HCCA |
| BP | GO:0006914 | autophagy | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| CC | GO:0030117 | membrane coat | IEP | HCCA |
| CC | GO:0030120 | vesicle coat | IEP | HCCA |
| CC | GO:0030127 | COPII vesicle coat | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| MF | GO:0046873 | metal ion transmembrane transporter activity | IEP | HCCA |
| BP | GO:0048193 | Golgi vesicle transport | IEP | HCCA |
| CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | HCCA |
| BP | GO:0061919 | process utilizing autophagic mechanism | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| CC | GO:0090575 | RNA polymerase II transcription regulator complex | IEP | HCCA |
| CC | GO:1902554 | serine/threonine protein kinase complex | IEP | HCCA |
| CC | GO:1902911 | protein kinase complex | IEP | HCCA |
| CC | GO:1990234 | transferase complex | IEP | HCCA |
| CC | GO:1990316 | Atg1/ULK1 kinase complex | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |
