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  5. Solyc05g023800.3.1

Solyc05g023800.3.1 (RAN2, Solyc05g023800)


Aliases : RAN2, Solyc05g023800

Description : Ran GTPase


Gene families : OG0000916 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000916_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g023800.3.1

Target Alias Description ECC score Gene Family Method Actions
AT5G20020 RAN2 RAS-related GTP-binding nuclear protein 2 0.06 OrthoFinder output from all 47 species
Als_g13007 RAN3, ATRAN3 GTPase *(Ran) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0147.g053043 RAN2 GTPase *(Ran) & original description: CDS=1-873 0.03 OrthoFinder output from all 47 species
Azfi_s0548.g076431 RAN2 GTPase *(Ran) & original description: CDS=1-873 0.03 OrthoFinder output from all 47 species
Cba_g31120 RAN1, RAN-1, ATRAN1 GTPase *(Ran) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.10G019400.1 RAN3, ATRAN3,... GTPase *(Ran) & original description: pacid=50612012... 0.04 OrthoFinder output from all 47 species
Ceric.35G063800.1 RAN3, ATRAN3,... GTPase *(Ran) & original description: pacid=50581751... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000194.22 RAN2 Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
Cre03.g191050 RAN1, RAN-1, ATRAN1 Protein translocation.nucleus.nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
Dac_g44710 RAN3, ATRAN3 GTPase *(Ran) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g28223 RAN2 GTPase *(Ran) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01015482001 RAN2 Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
Gb_30495 RAN3, ATRAN3 Ran GTPase 0.03 OrthoFinder output from all 47 species
Lfl_g22288 RAN3, ATRAN3 GTPase *(Ran) & original description: none 0.02 OrthoFinder output from all 47 species
Mp2g19920.1 RAN2 Ran GTPase 0.03 OrthoFinder output from all 47 species
Nbi_g04585 RAN3, ATRAN3 GTPase *(Ran) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g104700.4.1 RAN2, Solyc01g104700 Ran GTPase 0.06 OrthoFinder output from all 47 species
Spa_g05239 RAN3, ATRAN3 GTPase *(Ran) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g47199 RAN3, ATRAN3 GTPase *(Ran) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 15 171
No external refs found!