Solyc05g024210.1.1 (ATRTL1, RTL1, Solyc05g024210)

Aliases : ATRTL1, RTL1, Solyc05g024210

Description : Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica (sp|q69kj0|rtl3_orysj : 192.0)

Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc05g024210.1.1
Cluster	HCCA: Cluster_42

Target	Alias	Description	ECC score	Gene Family Method
Gb_25982	DCL1, CAF,...	endoribonuclease component DCL1 of DCL1-HYL1 miRNA...	0.01	OrthoFinder output from all 47 species
LOC_Os03g38740.1	ATDCL2, DCL2,...	Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp....	0.03	OrthoFinder output from all 47 species
Mp7g12090.1	DCL1, CAF,...	endoribonuclease component DCL1 of DCL1-HYL1 miRNA...	0.02	OrthoFinder output from all 47 species
Mp7g16380.1	DCL1, CAF,...	Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp....	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	IEA	Interproscan
MF	GO:0004540	ribonuclease activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003993	acid phosphatase activity	IEP	HCCA
MF	GO:0004180	carboxypeptidase activity	IEP	HCCA
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
MF	GO:0070008	serine-type exopeptidase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000999	RNase_III_dom	125	231

External Links

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Solyc05g024210.1.1 (ATRTL1, RTL1, Solyc05g024210)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation