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  5. Solyc05g045840.1.1

Solyc05g045840.1.1 (RPL16, Solyc05g045840)


Aliases : RPL16, Solyc05g045840

Description : 60S ribosomal protein L16, mitochondrial OS=Arabidopsis thaliana (sp|q95747|rm16_arath : 115.0)


Gene families : OG0004825 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004825_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g045840.1.1

Target Alias Description ECC score Gene Family Method Actions
ATMG00080 RPL16 ribosomal protein L16 0.03 OrthoFinder output from all 47 species
Aob_g10973 RPL16 component *(uL16m) of large mitoribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ceric.29G068300.1 RPL16, Ceric.29G068300 not classified & original description: pacid=50625723... 0.03 OrthoFinder output from all 47 species
Ceric.35G023300.1 RPL16, Ceric.35G023300 not classified & original description: pacid=50581973... 0.04 OrthoFinder output from all 47 species
Mp1g22400.1 No alias 60S ribosomal protein L16, mitochondrial OS=Marchantia... 0.05 OrthoFinder output from all 47 species
Ore_g00369 RPL16 component *(uL16c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Smo137887 RPL16 50S ribosomal protein L16, chloroplastic OS=Huperzia lucidula 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR001351 Ribosomal_S3_C 1 61
IPR016180 Ribosomal_L10e/L16 67 128
No external refs found!