1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc05g049960.4.1

Solyc05g049960.4.1 (Solyc05g049960)


Aliases : Solyc05g049960

Description : transcription factor (ARID)


Gene families : OG0001311 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001311_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g049960.4.1
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00212620 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.ARID... 0.03 OrthoFinder output from all 47 species
Als_g04310 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g21722 GYRB3 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene31837.t1 Aspi01Gene31837 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0101.g044404 No alias not classified & original description: CDS=1-1284 0.03 OrthoFinder output from all 47 species
Lfl_g24010 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10429133g0010 No alias transcription factor (ARID) 0.03 OrthoFinder output from all 47 species
Pir_g09482 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0144.g022932 No alias not classified & original description: CDS=48-1829 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001606 ARID_dom 58 119
No external refs found!