Solyc05g053940.3.1 (ATRAB1B, RABD2A,...)

Aliases : ATRAB1B, RABD2A, ATRABD2A, ARA5, RA-5, ARA-5, Solyc05g053940

Description : D-class RAB GTPase

Gene families : OG0001129 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001129_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc05g053940.3.1

Target	Alias	Description	ECC score	Gene Family Method
AT5G47200	ATRAB1A, ATRABD2B, RAB1A	RAB GTPase homolog 1A	0.05	OrthoFinder output from all 47 species
Adi_g013330	ATRAB1B, RABD2A,...	D-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g105164	RAB1C, ATRAB1C, ATRABD2C	D-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g01035	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0028.g023798	RAB1C, ATRAB1C, ATRABD2C	not classified & original description: CDS=1-543	0.03	OrthoFinder output from all 47 species
Azfi_s0095.g043564	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase & original description: CDS=1193-1804	0.03	OrthoFinder output from all 47 species
Cba_g55676	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.38G045700.1	RAB1C, ATRAB1C,...	D-class RAB GTPase & original description:...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001408.10	RAB1C, ATRAB1C, ATRABD2C	Vesicle trafficking.regulation of membrane tethering and...	0.06	OrthoFinder output from all 47 species
Dcu_g35830	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os01g08450.1	ATRAB1B, RABD2A,...	D-class RAB GTPase	0.07	OrthoFinder output from all 47 species
LOC_Os02g43690.3	ATRAB1B, RABD2A,...	GTP-binding protein YPTM2 OS=Zea mays...	0.06	OrthoFinder output from all 47 species
Len_g10682	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Mp3g00710.1	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Msp_g10383	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g46440	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g01990	RAB1C, ATRAB1C, ATRABD2C	D-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Smo228158	RAB1C, ATRAB1C, ATRABD2C	Vesicle trafficking.regulation of membrane tethering and...	0.02	OrthoFinder output from all 47 species
Spa_g48359	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e027735_P001	RAB1C, ATRAB1C,...	D-class RAB GTPase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	HCCA
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
CC	GO:0005789	endoplasmic reticulum membrane	IEP	HCCA
BP	GO:0006099	tricarboxylic acid cycle	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	10	169

External Links

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Solyc05g053940.3.1 (ATRAB1B, RABD2A,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation