Solyc05g056040.3.1 (ARF11, Solyc05g056040)

Aliases : ARF11, Solyc05g056040

Description : transcription factor (ARF)

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc05g056040.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00211p00025860	MP, IAA24, ARF5,...	RNA biosynthesis.transcriptional activation.B3...	0.02	OrthoFinder output from all 47 species
Adi_g001040	ARF11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g089250	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g06926	ARF1	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g11834	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g51944	ARF19, IAA22, ARF11	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g33211	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g12632	ARF16	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g70630	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene11714.t1	ARF6, Aspi01Gene11714	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene33428.t2	HSS, ARF1-BP,...	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene46203.t1	HSS, ARF1-BP,...	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene46204.t2	HSS, ARF1-BP,...	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g04069	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g12691	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.20G087500.1	ARF1, Ceric.20G087500	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.29G070000.1	ARF6, Ceric.29G070000	ARF-type transcription factor & original description:...	0.05	OrthoFinder output from all 47 species
Ceric.30G022300.1	ARF6, Ceric.30G022300	ARF-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Ceric.30G068500.1	ARF16, Ceric.30G068500	ARF-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Dcu_g08665	ARF16	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g19338	ARF16	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g01740	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
GSVIVT01019566001	ARF9	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
GSVIVT01023149001	ARF1	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
GSVIVT01025691001	ARF16	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
Gb_02925	ARF19, IAA22, ARF11	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Gb_23328	HSS, ARF1-BP, ARF2, ORE14	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Gb_39685	ARF6	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Gb_39686	ARF6	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
LOC_Os01g48060.1	ARF3, ETT, LOC_Os01g48060	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
LOC_Os04g43910.1	ARF10, LOC_Os04g43910	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os05g43920.1	ARF3, ETT, LOC_Os05g43920	transcription factor (ARF)	0.08	OrthoFinder output from all 47 species
LOC_Os05g48870.1	ARF3, ETT, LOC_Os05g48870	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
LOC_Os06g09660.1	ARF19, IAA22,...	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
LOC_Os06g46410.1	ARF6, LOC_Os06g46410	transcription factor (ARF)	0.06	OrthoFinder output from all 47 species
LOC_Os11g32110.1	HSS, ARF1-BP,...	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
MA_103763g0010	ARF6	Auxin response factor 6 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Mp1g12750.1	ARF6	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Ore_g40947	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g06380	ARF6	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g19455	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g11690	ARF6	transcriptional repressor *(IAA/AUX) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc06g075150.3.1	ARF16, Solyc06g075150	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Solyc09g007810.4.1	ARF16, Solyc09g007810	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Spa_g29254	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e003591_P003	ARF19, IAA22,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e006577_P003	ARF8, ATARF8,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e018126_P002	ARF6, Zm00001e018126	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e030325_P003	ARF6, Zm00001e030325	transcription factor (ARF)	0.06	OrthoFinder output from all 47 species
Zm00001e032135_P002	ARF3, ETT, Zm00001e032135	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e032423_P002	ARF3, ETT, Zm00001e032423	transcription factor (ARF)	0.09	OrthoFinder output from all 47 species
Zm00001e041910_P003	ARF8, ATARF8,...	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	129	229
IPR010525	ARF_dom	254	312

External Links

No external refs found!

Solyc05g056040.3.1 (ARF11, Solyc05g056040)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation