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  5. Solyc06g052080.4.1

Solyc06g052080.4.1 (Solyc06g052080)


Aliases : Solyc06g052080

Description : NSR RNA splicing regulator


Gene families : OG0000722 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000722_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Solyc06g052080.4.1
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00116460 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome-associated... 0.1 OrthoFinder output from all 47 species
Adi_g006726 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g047356 No alias RNA splicing regulator *(NSR) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g078877 No alias RNA splicing regulator *(NSR) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g17260 No alias RNA splicing regulator *(NSR) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0002.g001280 No alias RNA splicing regulator *(NSR) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g24615 No alias RNA splicing regulator *(NSR) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g14870 No alias RNA splicing regulator *(NSR) & original description: none 0.02 OrthoFinder output from all 47 species
Gb_18526 No alias NSR RNA splicing regulator 0.09 OrthoFinder output from all 47 species
LOC_Os06g03690.2 LOC_Os06g03690 NSR RNA splicing regulator 0.03 OrthoFinder output from all 47 species
Len_g11976 No alias RNA splicing regulator *(NSR) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g24910 No alias RNA splicing regulator *(NSR) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g07294 No alias RNA splicing regulator *(NSR) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g10153 No alias RNA splicing regulator *(NSR) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g18158 No alias RNA splicing regulator *(NSR) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g01741 No alias RNA splicing regulator *(NSR) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004574 No alias RNA splicing regulator *(NSR) & original description: CDS=202-912 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0181.g024840 No alias RNA splicing regulator *(NSR) & original description: CDS=178-987 0.02 OrthoFinder output from all 47 species
Spa_g06435 No alias RNA splicing regulator *(NSR) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g24886 No alias RNA splicing regulator *(NSR) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g39064 No alias RNA splicing regulator *(NSR) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g00769 No alias RNA splicing regulator *(NSR) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e024672_P001 Zm00001e024672 NSR RNA splicing regulator 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 141 204
No external refs found!