Solyc06g053210.4.1 (Solyc06g053210)

Aliases : Solyc06g053210

Description : no hits & (original description: none)

Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g053210.4.1
Cluster	HCCA: Cluster_10

Target	Alias	Description	ECC score	Gene Family Method
Ala_g18687	UBQ14	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g27780	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Als_g08097	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Als_g08770	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.05	OrthoFinder output from all 47 species
Als_g24990	UBQ14	UBQ ubiquitin-fold protein & original description: none	0.04	OrthoFinder output from all 47 species
Als_g26970	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.04	OrthoFinder output from all 47 species
Als_g30978	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Als_g49621	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Als_g49628	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.05	OrthoFinder output from all 47 species
Als_g49928	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Als_g58520	UBQ11	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g58521	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Als_g63264	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene18514.t1	UBQ11, Aspi01Gene18514	UBQ ubiquitin-fold protein & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene18515.t1	UBQ11, Aspi01Gene18515	UBQ ubiquitin-fold protein & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene18517.t1	UBQ11, Aspi01Gene18517	UBQ ubiquitin-fold protein & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene23135.t1	UBQ11, Aspi01Gene23135	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene44628.t1	RUB1, ATRUB1,...	RUB ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene57837.t1	UBQ10, Aspi01Gene57837	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g22839	UBQ10	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g29654	UBQ14	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g34959	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g79067	UBQ11	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.22G046000.1	UBQ7, RUB2,...	not classified & original description: pacid=50614635...	0.03	OrthoFinder output from all 47 species
LOC_Os04g53620.1	UBQ4, LOC_Os04g53620	ubiquitin-fold protein (UBQ)	0.04	OrthoFinder output from all 47 species
Len_g29368	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
MA_20231g0010	UBQ14	ubiquitin-fold protein (UBQ)	0.03	OrthoFinder output from all 47 species
MA_5869456g0010	UBQ11	Polyubiquitin 12 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
MA_9401507g0010	UBQ11	Polyubiquitin (Fragment) OS=Hordeum vulgare...	0.03	OrthoFinder output from all 47 species
Ppi_g55284	UBQ4	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004650	polygalacturonase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001975	Ribosomal_L40e	2	41

External Links

No external refs found!

Solyc06g053210.4.1 (Solyc06g053210)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation