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  5. Solyc06g053600.4.1

Solyc06g053600.4.1 (Solyc06g053600)


Aliases : Solyc06g053600

Description : Probable voltage-gated potassium channel subunit beta OS=Arabidopsis thaliana (sp|o23016|kcab_arath : 129.0)


Gene families : OG0001484 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001484_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g053600.4.1
Cluster HCCA: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
AT1G04420 No alias NAD(P)-linked oxidoreductase superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g060099 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g078790 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g09139 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cre17.g699900 No alias Probable voltage-gated potassium channel subunit beta... 0.01 OrthoFinder output from all 47 species
Dac_g01567 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g06867 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04575 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01027822001 No alias Probable voltage-gated potassium channel subunit beta... 0.05 OrthoFinder output from all 47 species
Gb_14958 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_40067 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os03g41510.1 LOC_Os03g41510 Probable voltage-gated potassium channel subunit beta... 0.04 OrthoFinder output from all 47 species
MA_10433813g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_44786g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp6g07940.1 No alias Probable voltage-gated potassium channel subunit beta... 0.05 OrthoFinder output from all 47 species
Ore_g19934 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g30698 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g09470 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g12094 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0079.g017772 No alias not classified & original description: CDS=67-1254 0.04 OrthoFinder output from all 47 species
Smo148450 No alias Probable voltage-gated potassium channel subunit beta... 0.03 OrthoFinder output from all 47 species
Smo233927 No alias Probable voltage-gated potassium channel subunit beta... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR023210 NADP_OxRdtase_dom 59 391
No external refs found!