1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc06g054070.3.1

Solyc06g054070.3.1 (Solyc06g054070)


Aliases : Solyc06g054070

Description : xylogen-type arabinogalactan protein


Gene families : OG0000195 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000195_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g054070.3.1
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AT1G73550 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.03 OrthoFinder output from all 47 species
AT1G73890 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.03 OrthoFinder output from all 47 species
AT2G27130 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.03 OrthoFinder output from all 47 species
Ceric.32G069900.1 Ceric.32G069900 not classified & original description: pacid=50597379... 0.03 OrthoFinder output from all 47 species
Dcu_g09538 No alias arabinogalactan protein *(Xylogen) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g42665 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01001178001 No alias Cell wall.cell wall proteins.hydroxyproline-rich... 0.03 OrthoFinder output from all 47 species
GSVIVT01001181001 EDA4 No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01018010001 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os03g57970.2 LOC_Os03g57970 xylogen-type arabinogalactan protein 0.02 OrthoFinder output from all 47 species
LOC_Os06g49770.1 LOC_Os06g49770 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g37455 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_19325g0010 No alias xylogen-type arabinogalactan protein 0.03 OrthoFinder output from all 47 species
MA_76307g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp8g18180.1 No alias xylogen-type arabinogalactan protein 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0056.g014611 No alias arabinogalactan protein *(Xylogen) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e038813_P001 Zm00001e038813 xylogen-type arabinogalactan protein 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR016140 Bifunc_inhib/LTP/seed_store 24 103
No external refs found!