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  5. Solyc06g063140.4.1

Solyc06g063140.4.1 (RPT1A, Solyc06g063140)


Aliases : RPT1A, Solyc06g063140

Description : regulatory component RPT1 of 26S proteasome


Gene families : OG0004346 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004346_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g063140.4.1

Target Alias Description ECC score Gene Family Method Actions
AT1G53750 RPT1A regulatory particle triple-A 1A 0.03 OrthoFinder output from all 47 species
Aev_g11650 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Aop_g01687 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Azfi_s0051.g031375 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Ceric.30G008600.1 RPT1A, Ceric.30G008600 regulatory component *(RPT1) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021464.16 RPT1A Protein degradation.26S proteasome.regulatory... 0.03 OrthoFinder output from all 47 species
Cre14.g625400 RPT1A Protein degradation.26S proteasome.regulatory... 0.07 OrthoFinder output from all 47 species
Dcu_g01171 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Dde_g03314 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Gb_11942 RPT1A regulatory component RPT1 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Gb_26075 RPT1A regulatory component RPT1 of 26S proteasome 0.04 OrthoFinder output from all 47 species
LOC_Os02g54340.1 RPT1A, LOC_Os02g54340 regulatory component RPT1 of 26S proteasome 0.03 OrthoFinder output from all 47 species
LOC_Os06g09290.2 RPT1A, LOC_Os06g09290 regulatory component RPT1 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Len_g10926 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
MA_10435556g0010 RPT1A regulatory component RPT1 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Mp2g04840.1 RPT1A regulatory component RPT1 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Nbi_g10523 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Smo146742 RPT1A Protein degradation.26S proteasome.regulatory... 0.04 OrthoFinder output from all 47 species
Zm00001e023743_P001 RPT1A, Zm00001e023743 regulatory component RPT1 of 26S proteasome 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 208 340
IPR041569 AAA_lid_3 363 406
No external refs found!