Aliases : Solyc06g066060
Description : RNA helicase (Sub2). helicase component UAP56 of TREX/THO mRNP trafficking complex
Gene families : OG0002123 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002123_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc06g066060.3.1 | |
| Cluster | HCCA: Cluster_19 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00036p00225190 | evm_27.TU.AmTr_v1... | RNA processing.messenger ribonucleoprotein particle... | 0.08 | OrthoFinder output from all 47 species | |
| AT5G11200 | No alias | DEAD/DEAH box RNA helicase family protein | 0.06 | OrthoFinder output from all 47 species | |
| Aev_g13080 | No alias | helicase UAP56 & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0065.g035967 | No alias | helicase UAP56 & original description: CDS=1-1335 | 0.04 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00001376.21 | No alias | DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sativa... | 0.02 | OrthoFinder output from all 47 species | |
| Cre17.g719000 | No alias | RNA processing.messenger ribonucleoprotein particle... | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g19847 | No alias | helicase UAP56 & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g43300 | No alias | helicase UAP56 & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os01g36890.2 | LOC_Os01g36890 | RNA helicase (Sub2). helicase component UAP56 of... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g36920.2 | LOC_Os01g36920 | RNA helicase (Sub2). helicase component UAP56 of... | 0.07 | OrthoFinder output from all 47 species | |
| MA_99733g0010 | No alias | RNA helicase (Sub2). helicase component UAP56 of... | 0.02 | OrthoFinder output from all 47 species | |
| Mp1g02350.1 | No alias | RNA helicase (Sub2). helicase component UAP56 of... | 0.03 | OrthoFinder output from all 47 species | |
| Pp3c7_5890V3.1 | Pp3c7_5890 | DEAD/DEAH box RNA helicase family protein | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g51328 | No alias | helicase UAP56 & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g50790 | No alias | helicase UAP56 & original description: none | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| MF | GO:0005524 | ATP binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000049 | tRNA binding | IEP | HCCA |
| BP | GO:0001510 | RNA methylation | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006400 | tRNA modification | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0008033 | tRNA processing | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| BP | GO:0030488 | tRNA methylation | IEP | HCCA |
| CC | GO:0031515 | tRNA (m1A) methyltransferase complex | IEP | HCCA |
| BP | GO:0032259 | methylation | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| CC | GO:0034708 | methyltransferase complex | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| BP | GO:0043414 | macromolecule methylation | IEP | HCCA |
| CC | GO:0043527 | tRNA methyltransferase complex | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| CC | GO:1990234 | transferase complex | IEP | HCCA |
| No external refs found! |
