Solyc06g068320.3.1 (Solyc06g068320)

Aliases : Solyc06g068320

Description : proline-tRNA ligase

Gene families : OG0001971 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001971_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g068320.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00058p00127050	evm_27.TU.AmTr_v1...	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.04	OrthoFinder output from all 47 species
AT3G62120	No alias	Class II aaRS and biotin synthetases superfamily protein	0.05	OrthoFinder output from all 47 species
Aev_g05302	No alias	proline-tRNA ligase & original description: none	0.06	OrthoFinder output from all 47 species
Als_g01002	No alias	proline-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001576.14	OVA6, PRORS1	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001576.15	OVA6, PRORS1	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021463.3	OVA6, PRORS1	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.01	OrthoFinder output from all 47 species
Cre10.g429100	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.02	OrthoFinder output from all 47 species
Dcu_g02781	No alias	proline-tRNA ligase & original description: none	0.06	OrthoFinder output from all 47 species
GSVIVT01028250001	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.04	OrthoFinder output from all 47 species
LOC_Os12g25710.1	LOC_Os12g25710	proline-tRNA ligase	0.05	OrthoFinder output from all 47 species
Msp_g03194	No alias	proline-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g01128	No alias	proline-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Smo74713	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.06	OrthoFinder output from all 47 species
Spa_g09904	No alias	proline-tRNA ligase & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e007170_P001	Zm00001e007170	proline-tRNA ligase	0.03	OrthoFinder output from all 47 species
Zm00001e024670_P003	Zm00001e024670	proline-tRNA ligase	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
MF	GO:0004827	proline-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	Interproscan
BP	GO:0006433	prolyl-tRNA aminoacylation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005789	endoplasmic reticulum membrane	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
BP	GO:0018279	protein N-linked glycosylation via asparagine	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
MF	GO:0032977	membrane insertase activity	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0043461	proton-transporting ATP synthase complex assembly	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0070071	proton-transporting two-sector ATPase complex assembly	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140597	protein carrier chaperone	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR016061	Pro-tRNA_ligase_II_C	442	515
IPR004154	Anticodon-bd	319	414
IPR002314	aa-tRNA-synt_IIb	134	300

External Links

No external refs found!

Solyc06g068320.3.1 (Solyc06g068320)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation