Solyc06g069760.3.1 (CDF3, Solyc06g069760)

Aliases : CDF3, Solyc06g069760

Description : transcription factor (DOF)

Gene families : OG0000067 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g069760.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00248860	TMO6,...	RNA biosynthesis.transcriptional activation.C2C2...	0.04	OrthoFinder output from all 47 species
AMTR_s00010p00264070	CDF3,...	RNA biosynthesis.transcriptional activation.C2C2...	0.05	OrthoFinder output from all 47 species
AMTR_s00119p00099150	CDF2,...	RNA biosynthesis.transcriptional activation.C2C2...	0.05	OrthoFinder output from all 47 species
AT1G26790	No alias	Dof-type zinc finger DNA-binding family protein	0.1	OrthoFinder output from all 47 species
AT3G47500	CDF3	cycling DOF factor 3	0.08	OrthoFinder output from all 47 species
AT5G62430	CDF1	cycling DOF factor 1	0.08	OrthoFinder output from all 47 species
Adi_g022624	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g050522	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g079893	TMO6	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g13677	CDF2	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g18800	CDF3	transcription factor *(DOF) & original description: none	0.08	OrthoFinder output from all 47 species
Als_g11020	CDF2	transcription factor *(DOF) & original description: none	0.05	OrthoFinder output from all 47 species
Als_g18462	No alias	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Als_g20563	ADOF1, DOF1	transcription factor *(DOF) & original description: none	0.05	OrthoFinder output from all 47 species
Aob_g04142	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g14979	TMO6	transcription factor *(DOF) & original description: none	0.01	OrthoFinder output from all 47 species
Aop_g14669	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene13553.t1	CDF3, Aspi01Gene13553	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g24216	ADOF1, DOF1	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.20G020200.1	CDF1, Ceric.20G020200	transcription factor *(DOF) & original description:...	0.05	OrthoFinder output from all 47 species
Dde_g02219	ADOF1, DOF1	transcription factor *(DOF) & original description: none	0.05	OrthoFinder output from all 47 species
Dde_g25853	TMO6	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g16326	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g28530	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01011433001	CDF2	RNA biosynthesis.transcriptional activation.C2C2...	0.06	OrthoFinder output from all 47 species
GSVIVT01019619001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
GSVIVT01019969001	CDF1	RNA biosynthesis.transcriptional activation.C2C2...	0.12	OrthoFinder output from all 47 species
GSVIVT01029943001	CDF3	RNA biosynthesis.transcriptional activation.C2C2...	0.11	OrthoFinder output from all 47 species
Gb_07177	CDF2	transcription factor (DOF)	0.05	OrthoFinder output from all 47 species
LOC_Os03g07360.1	CDF3, LOC_Os03g07360	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
LOC_Os03g38870.1	LOC_Os03g38870	transcription factor (DOF)	0.06	OrthoFinder output from all 47 species
LOC_Os03g60630.1	LOC_Os03g60630	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
LOC_Os07g48570.1	CDF2, LOC_Os07g48570	transcription factor (DOF)	0.05	OrthoFinder output from all 47 species
Len_g19257	OBP3	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Len_g30040	CDF2	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Len_g39179	CDF1	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
MA_175298g0010	CDF2	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
MA_2430g0010	CDF3	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
MA_7537g0010	TMO6	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Msp_g19051	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g20658	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g22212	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g07474	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Solyc02g088070.3.1	CDF3, Solyc02g088070	transcription factor (DOF)	0.11	OrthoFinder output from all 47 species
Solyc06g062520.1.1	ADOF1, DOF1,...	transcription factor (DOF)	0.06	OrthoFinder output from all 47 species
Spa_g49511	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g14068	OBP3	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g19759	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e017319_P001	CDF2, Zm00001e017319	transcription factor (DOF)	0.05	OrthoFinder output from all 47 species
Zm00001e023218_P004	Zm00001e023218	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	142	198

External Links

No external refs found!

Solyc06g069760.3.1 (CDF3, Solyc06g069760)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation