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  5. Solyc06g073300.1.1

Solyc06g073300.1.1 (Solyc06g073300)


Aliases : Solyc06g073300

Description : component RPL27 of LSU proteome component


Gene families : OG0000924 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000924_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g073300.1.1
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00176990 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 OrthoFinder output from all 47 species
AMTR_s00045p00086530 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder output from all 47 species
AT3G22230 No alias Ribosomal L27e protein family 0.3 OrthoFinder output from all 47 species
AT4G15000 No alias Ribosomal L27e protein family 0.36 OrthoFinder output from all 47 species
Adi_g001800 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Adi_g039162 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g042919 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.18 OrthoFinder output from all 47 species
Adi_g088547 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Adi_g101519 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Adi_g128378 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g128386 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ala_g18759 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.23 OrthoFinder output from all 47 species
Ala_g31238 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ala_g39103 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Als_g21878 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Als_g21879 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Als_g25310 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Als_g44669 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Als_g54848 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Als_g58974 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Als_g62644 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aob_g21997 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Aob_g30984 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aob_g41248 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g16882 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aop_g30907 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Aop_g33173 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.28 OrthoFinder output from all 47 species
Aspi01Gene03460.t1 Aspi01Gene03460 component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g009473 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0123.g048378 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Cba_g35098 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cba_g77185 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.11G027700.1 Ceric.11G027700 component *(eL27) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Ceric.22G025200.1 Ceric.22G025200 component *(eL27) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ceric.22G025300.1 Ceric.22G025300 component *(eL27) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021275.23 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.23 OrthoFinder output from all 47 species
Cre17.g701650 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.35 OrthoFinder output from all 47 species
Dac_g26159 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Dcu_g29436 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Dcu_g32145 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Dcu_g40042 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Dde_g23040 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
GSVIVT01012080001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 OrthoFinder output from all 47 species
GSVIVT01020410001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
Gb_36674 No alias component RPL27 of LSU proteome component 0.27 OrthoFinder output from all 47 species
LOC_Os02g18380.1 LOC_Os02g18380 component RPL27 of LSU proteome component 0.09 OrthoFinder output from all 47 species
LOC_Os10g41470.1 LOC_Os10g41470 component RPL27 of LSU proteome component 0.11 OrthoFinder output from all 47 species
Len_g08706 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Len_g27313 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
MA_3390g0010 No alias component RPL27 of LSU proteome component 0.16 OrthoFinder output from all 47 species
Mp4g23910.1 No alias component RPL27 of LSU proteome component 0.32 OrthoFinder output from all 47 species
Msp_g18021 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Nbi_g20151 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Nbi_g40024 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ore_g04282 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ore_g20757 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g07123 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ppi_g11574 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g14343 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Ppi_g19581 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ppi_g20543 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g22587 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g22762 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g22766 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Ppi_g33968 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0210.g025908 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Sacu_v1.1_s0521.g027461 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Sam_g00195 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g20317 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Sam_g28095 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Sam_g30675 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g30677 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Sam_g46235 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g48247 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Smo166700 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 OrthoFinder output from all 47 species
Spa_g03073 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.19 OrthoFinder output from all 47 species
Spa_g24106 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.17 OrthoFinder output from all 47 species
Spa_g33923 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Spa_g44975 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Tin_g43604 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.21 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001141 Ribosomal_L27e 52 135
No external refs found!