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  5. Solyc06g076040.3.1

Solyc06g076040.3.1 (PUB13, ATPUB13, Solyc06g076040)


Aliases : PUB13, ATPUB13, Solyc06g076040

Description : E3 ubiquitin ligase (PUB)


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g076040.3.1
Cluster HCCA: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00217990 evm_27.TU.AmTr_v1... U-box domain-containing protein 16 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00025p00052670 PUB13, ATPUB13,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AMTR_s00072p00171260 PUB14, ATPUB14,... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AMTR_s00086p00031680 evm_27.TU.AmTr_v1... U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AT1G10560 PUB18, ATPUB18 plant U-box 18 0.03 OrthoFinder output from all 47 species
AT1G23030 No alias ARM repeat superfamily protein 0.06 OrthoFinder output from all 47 species
AT1G29340 ATPUB17, PUB17 plant U-box 17 0.04 OrthoFinder output from all 47 species
AT1G71020 No alias ARM repeat superfamily protein 0.08 OrthoFinder output from all 47 species
AT3G07360 PUB9, ATPUB9 plant U-box 9 0.05 OrthoFinder output from all 47 species
AT4G21350 PUB8, B80 plant U-box 8 0.03 OrthoFinder output from all 47 species
Adi_g009234 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g017517 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g019046 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g026489 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g054040 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g080188 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g102535 ATPUB17, PUB17 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g03944 PUB12, AtPUB12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g04770 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.07 OrthoFinder output from all 47 species
Aev_g05159 PUB12, AtPUB12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g09883 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g08869 PUB15 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07222 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g14928 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g16049 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g16594 PUB14, ATPUB14 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g26320 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g28208 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01345 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene01377.t1 PUB14, ATPUB14,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene44181.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44182.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene44183.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene44184.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene44185.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene65975.t1 PUB8, B80,... E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s2565.g112179 No alias not classified & original description: CDS=1-438 0.02 OrthoFinder output from all 47 species
Cba_g19264 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.19G008100.1 PUB25, Ceric.19G008100 not classified & original description: pacid=50576706... 0.04 OrthoFinder output from all 47 species
Ceric.1Z013500.1 PUB13, ATPUB13,... E3 ubiquitin ligase & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.34G042900.1 PUB13, ATPUB13,... not classified & original description: pacid=50623547... 0.03 OrthoFinder output from all 47 species
Dac_g03673 PUB14, ATPUB14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g23493 PUB18, ATPUB18 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g35890 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g16944 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g02665 PUB14, ATPUB14 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g04784 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g26730 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04978 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g06164 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13215 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17103 PUB13, ATPUB13 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g22153 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01007275001 PUB9, ATPUB9 Protein degradation.peptide tagging.Ubiquitin... 0.05 OrthoFinder output from all 47 species
GSVIVT01009347001 No alias U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01021265001 ATPUB17, PUB17 U-box domain-containing protein 17 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01023893001 PUB15 U-box domain-containing protein 15 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01030205001 No alias U-box domain-containing protein 16 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_10627 PUB8, B80 U-box domain-containing protein 13 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_29276 ATPUB17, PUB17 E3 ubiquitin ligase (PUB) 0.04 OrthoFinder output from all 47 species
LOC_Os01g60860.1 LOC_Os01g60860 U-box domain-containing protein 16 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
LOC_Os01g72600.1 LOC_Os01g72600 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os02g49950.1 LOC_Os02g49950 E3 ubiquitin ligase (PUB) 0.05 OrthoFinder output from all 47 species
LOC_Os03g16824.1 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
LOC_Os05g39930.1 LOC_Os05g39930 U-box domain-containing protein 16 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g08149 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g30685 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_129765g0010 ATPUB17, PUB17 U-box domain-containing protein 1 OS=Medicago truncatula... 0.03 OrthoFinder output from all 47 species
MA_69133g0010 PUB14, ATPUB14 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
MA_84321g0010 PUB13, ATPUB13 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Msp_g01206 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g16068 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g37725 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g03120 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g00644 PUB12, AtPUB12 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g05165 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20708 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g28240 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35149 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g11295 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g30213 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g02760 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g17953 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g25353 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g30472 PUB13, ATPUB13 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06266 PUB14, ATPUB14 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000382 No alias not classified & original description: CDS=1-1704 0.03 OrthoFinder output from all 47 species
Smo231208 PUB13, ATPUB13 Protein degradation.peptide tagging.Ubiquitin... 0.05 OrthoFinder output from all 47 species
Smo84320 PUB13, ATPUB13 Protein degradation.peptide tagging.Ubiquitin... 0.05 OrthoFinder output from all 47 species
Solyc01g096460.2.1 Solyc01g096460 U-box domain-containing protein 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc02g072080.1.1 ATPUB17, PUB17,... U-box domain-containing protein 17 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc11g008390.2.1 PUB14, ATPUB14,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Spa_g11467 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g11468 PUB14, ATPUB14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g12131 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g48656 PUB14, ATPUB14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g01104 No alias E3 ubiquiTin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g14575 PUB18, ATPUB18 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g39824 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e019429_P001 Zm00001e019429 U-box domain-containing protein 16 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e028839_P001 Zm00001e028839 U-box domain-containing protein 16 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e031915_P001 Zm00001e031915 U-box domain-containing protein 16 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015098 molybdate ion transmembrane transporter activity IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
BP GO:0015689 molybdate ion transport IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000225 Armadillo 465 503
IPR000225 Armadillo 547 586
IPR000225 Armadillo 382 421
IPR003613 Ubox_domain 256 326
No external refs found!