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  5. Solyc07g043580.4.1

Solyc07g043580.4.1 (PIL6, PIF5, Solyc07g043580)


Aliases : PIL6, PIF5, Solyc07g043580

Description : transcription factor (bHLH). PIF red/far-red light perception transcriptional regulator


Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g043580.4.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00141060 PIF3, POC1,... External stimuli response.light.red/far red light.PIF... 0.04 OrthoFinder output from all 47 species
AMTR_s00079p00137860 BEE3,... External stimuli response.light.UV-A/blue... 0.03 OrthoFinder output from all 47 species
AT1G18400 BEE1 BR enhanced expression 1 0.04 OrthoFinder output from all 47 species
AT1G73830 BEE3 BR enhanced expression 3 0.03 OrthoFinder output from all 47 species
AT2G43010 SRL2, PIF4, AtPIF4 phytochrome interacting factor 4 0.04 OrthoFinder output from all 47 species
AT3G59060 PIL6, PIF5 phytochrome interacting factor 3-like 6 0.03 OrthoFinder output from all 47 species
Adi_g036691 LRL3 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g06285 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g18353 HEC1 bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g26607 RSL2 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06024 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Als_g12122 PIL5, PIF1 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g17417 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g48384 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g21168 LRL3 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g05555 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g20728 SPT bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene13223.t1 HEC1, Aspi01Gene13223 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene14949.t1 LRL3, Aspi01Gene14949 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene29543.t1 Aspi01Gene29543 regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene35112.t2 SPT, Aspi01Gene35112 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene63646.t1 LRL3, Aspi01Gene63646 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene72623.t1 Aspi01Gene72623 regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Azfi_s0090.g042718 RSL2 bHLH-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Azfi_s0191.g057013 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: CDS=8-1831 0.04 OrthoFinder output from all 47 species
Cba_g25222 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g57120 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Cba_g60405 SPT bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G038900.1 LRL3, Ceric.04G038900 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.09G026000.1 LRL3, Ceric.09G026000 bHLH-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.34G041700.1 PIF3, POC1,... bHLH-type transcription factor & original description:... 0.06 OrthoFinder output from all 47 species
Dac_g30817 SPT bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g08487 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g31834 SPT bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01011873001 No alias External stimuli response.light.UV-A/blue... 0.03 OrthoFinder output from all 47 species
GSVIVT01013553001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
GSVIVT01018164001 UNE10 Transcription factor UNE10 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01018165001 UNE10 RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
GSVIVT01020814001 SRL2, PIF4, AtPIF4 External stimuli response.light.red/far red light.PIF... 0.06 OrthoFinder output from all 47 species
GSVIVT01022111001 SPT RNA biosynthesis.transcriptional activation.bHLH... 0.05 OrthoFinder output from all 47 species
GSVIVT01025313001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.07 OrthoFinder output from all 47 species
GSVIVT01026056001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
GSVIVT01028238001 PIF3, POC1, PAP3 RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
GSVIVT01028516001 PIL5, PIF1 External stimuli response.light.red/far red light.PIF... 0.05 OrthoFinder output from all 47 species
GSVIVT01033356001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
Gb_06182 No alias transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Gb_30387 UNE10 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
LOC_Os03g51910.1 LOC_Os03g51910 transcription factor (bHLH). transcriptional regulator (CIB) 0.05 OrthoFinder output from all 47 species
LOC_Os03g55550.1 RSL2, LOC_Os03g55550 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
LOC_Os09g28210.1 HEC1, LOC_Os09g28210 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Len_g13668 LRL3 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Len_g22408 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g03405 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07763 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g09246 HEC2 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g39480 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_306658g0010 No alias transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Msp_g09011 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g00901 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g11326 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g08799 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19998 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g31298 ATRSL1, RSL1 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g44898 SPT bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g06488 CIB1 regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Pir_g06619 CIB1 regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Pir_g17357 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g32514 LRL3 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g60433 SPT bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g08374 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g33766 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g13565 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29684 HEC2 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g43879 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g62088 CIB1 regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0050.g013831 SPT bHLH-type transcription factor & original description: CDS=1-1485 0.02 OrthoFinder output from all 47 species
Sam_g14482 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Solyc03g044460.1.1 HEC2, Solyc03g044460 transcription factor (bHLH) 0.06 OrthoFinder output from all 47 species
Solyc04g007300.4.1 BEE3, Solyc04g007300 transcription factor (bHLH). transcriptional regulator (CIB) 0.04 OrthoFinder output from all 47 species
Solyc05g006650.3.1 Solyc05g006650 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
Solyc11g005780.3.1 HEC3, Solyc11g005780 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Spa_g08006 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g11218 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g22560 SPT bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26254 CIB1 regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Spa_g38143 ATRSL1, RSL1 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g41478 RSL2 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g38881 SPT bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000921_P005 Zm00001e000921 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
Zm00001e002331_P003 UNE10, Zm00001e002331 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e003701_P003 Zm00001e003701 transcription factor (bHLH). transcriptional regulator (CIB) 0.05 OrthoFinder output from all 47 species
Zm00001e005554_P001 Zm00001e005554 transcription factor (bHLH). transcriptional regulator (CIB) 0.07 OrthoFinder output from all 47 species
Zm00001e010138_P002 Zm00001e010138 transcription factor (bHLH). transcriptional regulator (CIB) 0.04 OrthoFinder output from all 47 species
Zm00001e010540_P001 Zm00001e010540 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
Zm00001e011410_P001 Zm00001e011410 transcription factor (bHLH). transcriptional regulator (CIB) 0.04 OrthoFinder output from all 47 species
Zm00001e011866_P002 UNE12, Zm00001e011866 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e015045_P002 Zm00001e015045 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e015610_P001 RHD6, Zm00001e015610 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e018857_P002 Zm00001e018857 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
Zm00001e018946_P001 Zm00001e018946 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e030725_P001 Zm00001e030725 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e034146_P001 LRL1, Zm00001e034146 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e037266_P001 Zm00001e037266 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 133 179
No external refs found!