Solyc07g062190.4.1 (emb1473, Solyc07g062190)

Aliases : emb1473, Solyc07g062190

Description : component psRPL13 of large ribosomal subunit proteome

Gene families : OG0006254 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006254_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc07g062190.4.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00046p00228230	emb1473,...	Protein biosynthesis.organelle translation...	0.05	OrthoFinder output from all 47 species
AT1G78630	emb1473	Ribosomal protein L13 family protein	0.12	OrthoFinder output from all 47 species
Aev_g00534	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Ala_g09807	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.13	OrthoFinder output from all 47 species
Als_g17613	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.14	OrthoFinder output from all 47 species
Aob_g06248	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Aop_g00301	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.12	OrthoFinder output from all 47 species
Aspi01Gene67483.t1	emb1473, Aspi01Gene67483	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0224.g058887	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.12	OrthoFinder output from all 47 species
Cba_g03008	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ceric.14G072800.1	emb1473, Ceric.14G072800	component *(uL13c) of large plastid ribosomal-subunit...	0.25	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020912.24	emb1473	50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Cre06.g264350	emb1473	Protein biosynthesis.organelle translation...	0.2	OrthoFinder output from all 47 species
Dac_g17592	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Dcu_g00726	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Dde_g01255	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Ehy_g04479	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
GSVIVT01014101001	emb1473	Protein biosynthesis.organelle translation...	0.15	OrthoFinder output from all 47 species
Gb_28095	emb1473	component psRPL13 of large ribosomal subunit proteome	0.11	OrthoFinder output from all 47 species
LOC_Os01g54540.1	emb1473, LOC_Os01g54540	component psRPL13 of large ribosomal subunit proteome	0.15	OrthoFinder output from all 47 species
Len_g01005	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Lfl_g03832	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.16	OrthoFinder output from all 47 species
MA_10433400g0010	emb1473	component psRPL13 of large ribosomal subunit proteome	0.14	OrthoFinder output from all 47 species
MA_27171g0010	No alias	no hits & (original description: none)	0.13	OrthoFinder output from all 47 species
Mp3g07030.1	emb1473	component psRPL13 of large ribosomal subunit proteome	0.26	OrthoFinder output from all 47 species
Msp_g09623	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Nbi_g04003	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ore_g11308	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Pnu_g03358	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Pp3c24_18330V3.1	emb1473, Pp3c24_18330	Ribosomal protein L13 family protein	0.06	OrthoFinder output from all 47 species
Ppi_g11794	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.13	OrthoFinder output from all 47 species
Sam_g16893	No alias	component *(uL13c) of large plastid ribosomal-subunit...	0.12	OrthoFinder output from all 47 species
Smo7665	emb1473	Protein biosynthesis.organelle translation...	0.06	OrthoFinder output from all 47 species
Spa_g21366	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Tin_g09876	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006729	tetrahydrobiopterin biosynthetic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
MF	GO:0008124	4-alpha-hydroxytetrahydrobiopterin dehydratase activity	IEP	HCCA
MF	GO:0008171	O-methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
BP	GO:0015994	chlorophyll metabolic process	IEP	HCCA
BP	GO:0015995	chlorophyll biosynthetic process	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0034311	diol metabolic process	IEP	HCCA
BP	GO:0034312	diol biosynthetic process	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	HCCA
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046146	tetrahydrobiopterin metabolic process	IEP	HCCA
BP	GO:0046148	pigment biosynthetic process	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0046173	polyol biosynthetic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0046406	magnesium protoporphyrin IX methyltransferase activity	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005822	Ribosomal_L13	97	219

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Solyc07g062190.4.1 (emb1473, Solyc07g062190)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation