1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc07g063200.3.1

Solyc07g063200.3.1 (RMA3, ATRMA3, Solyc07g063200)


Aliases : RMA3, ATRMA3, Solyc07g063200

Description : RING-HC-class E3 ligase


Gene families : OG0000266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000266_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g063200.3.1

Target Alias Description ECC score Gene Family Method Actions
Aop_g25276 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g05253 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g13035 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g20939 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009643001 No alias No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01031912001 No alias No description available 0.07 OrthoFinder output from all 47 species
Gb_19856 No alias RING-HC-class E3 ligase 0.04 OrthoFinder output from all 47 species
Gb_30243 No alias RING-HC-class E3 ligase 0.03 OrthoFinder output from all 47 species
Len_g09605 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04855 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g01000 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g35625 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g09286 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g17090 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04627 No alias E3 ubiquiTin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR018957 Znf_C3HC4_RING-type 36 82
No external refs found!