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  5. Solyc07g065510.4.1

Solyc07g065510.4.1 (Solyc07g065510)


Aliases : Solyc07g065510

Description : component CPFS6/CFIm68 of Cleavage Factor I (CF-Im) complex


Gene families : OG0002089 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002089_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g065510.4.1
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AT1G13190 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Adi_g081353 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g14101 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.02 OrthoFinder output from all 47 species
Aob_g17567 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.02 OrthoFinder output from all 47 species
Ceric.10G054500.1 Ceric.10G054500 component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.04 OrthoFinder output from all 47 species
Ceric.18G063400.1 Ceric.18G063400 component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021582.13 No alias RNA processing.RNA 3-end polyadenylation.Cleavage Factor... 0.02 OrthoFinder output from all 47 species
Cre08.g384950 No alias No description available 0.02 OrthoFinder output from all 47 species
Dde_g02913 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.02 OrthoFinder output from all 47 species
Ehy_g13682 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.04 OrthoFinder output from all 47 species
GSVIVT01000588001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage Factor... 0.03 OrthoFinder output from all 47 species
Gb_03117 No alias component CPFS6/CFIm68 of Cleavage Factor I (CF-Im) complex 0.02 OrthoFinder output from all 47 species
LOC_Os08g38240.1 LOC_Os08g38240 component CPFS6/CFIm68 of Cleavage Factor I (CF-Im) complex 0.04 OrthoFinder output from all 47 species
Len_g15072 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.03 OrthoFinder output from all 47 species
Lfl_g03230 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.05 OrthoFinder output from all 47 species
MA_202067g0010 No alias component CPFS6/CFIm68 of Cleavage Factor I (CF-Im) complex 0.02 OrthoFinder output from all 47 species
Mp3g08890.1 No alias component CPFS6/CFIm68 of Cleavage Factor I (CF-Im) complex 0.04 OrthoFinder output from all 47 species
Nbi_g03128 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.04 OrthoFinder output from all 47 species
Ore_g09611 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.03 OrthoFinder output from all 47 species
Pir_g11326 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.03 OrthoFinder output from all 47 species
Pnu_g18790 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.02 OrthoFinder output from all 47 species
Sam_g13762 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.04 OrthoFinder output from all 47 species
Sam_g16242 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.03 OrthoFinder output from all 47 species
Spa_g19034 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.03 OrthoFinder output from all 47 species
Zm00001e003418_P002 Zm00001e003418 component CPFS6/CFIm68 of Cleavage Factor I (CF-Im) complex 0.05 OrthoFinder output from all 47 species
Zm00001e024332_P002 Zm00001e024332 component CPFS6/CFIm68 of Cleavage Factor I (CF-Im) complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 260 329
No external refs found!