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  5. Solyc08g007470.2.1

Solyc08g007470.2.1 (Solyc08g007470)


Aliases : Solyc08g007470

Description : no hits & (original description: none)


Gene families : OG0000018 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g007470.2.1

Target Alias Description ECC score Gene Family Method Actions
AT3G13030 No alias hAT transposon superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g127603 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01017686001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01027351001 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os06g49050.1 LOC_Os06g49050 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Sam_g17458 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016073 snRNA metabolic process IEP HCCA
BP GO:0016180 snRNA processing IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034472 snRNA 3'-end processing IEP HCCA
BP GO:0034477 U6 snRNA 3'-end processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR008906 HATC_C_dom 560 623
IPR003656 Znf_BED 7 42
IPR007021 DUF659 183 334
No external refs found!