Solyc08g008380.4.1 (ARF9, Solyc08g008380)

Aliases : ARF9, Solyc08g008380

Description : transcription factor (ARF)

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc08g008380.4.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00200760	ARF4,...	RNA biosynthesis.transcriptional activation.B3...	0.04	OrthoFinder output from all 47 species
AMTR_s00025p00198750	ARF19, IAA22,...	RNA biosynthesis.transcriptional activation.B3...	0.04	OrthoFinder output from all 47 species
AMTR_s00211p00025860	MP, IAA24, ARF5,...	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
AT1G19850	MP, IAA24, ARF5	Transcriptional factor B3 family protein /...	0.05	OrthoFinder output from all 47 species
AT1G34310	ARF12	auxin response factor 12	0.03	OrthoFinder output from all 47 species
AT1G35240	ARF20	auxin response factor 20	0.05	OrthoFinder output from all 47 species
AT1G35520	ARF15	auxin response factor 15	0.03	OrthoFinder output from all 47 species
AT2G33860	ARF3, ETT	Transcriptional factor B3 family protein /...	0.04	OrthoFinder output from all 47 species
AT5G37020	ARF8, ATARF8	auxin response factor 8	0.04	OrthoFinder output from all 47 species
Adi_g024483	ARF19, IAA22, ARF11	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g054963	ARF16	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g054964	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g089250	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g27966	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g14726	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g32730	TIR5, MSG1,...	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene55123.t1	ARF6, Aspi01Gene55123	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene61150.t1	ARF16, Aspi01Gene61150	ARF-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Azfi_s0002.g001367	ARF10	ARF-type transcription factor & original description: CDS=1-2124	0.02	OrthoFinder output from all 47 species
Azfi_s0005.g009155	ARF6	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Azfi_s0038.g026103	ARF6	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Azfi_s0065.g035933	ARF6	not classified & original description: CDS=1-678	0.02	OrthoFinder output from all 47 species
Azfi_s0384.g067487	ARF8, ATARF8	ARF-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Cba_g33073	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.30G022300.1	ARF6, Ceric.30G022300	ARF-type transcription factor & original description:...	0.05	OrthoFinder output from all 47 species
Dac_g03840	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g07132	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Dac_g41121	ARF16	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g43864	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g11626	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g01740	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g07024	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g08681	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g08691	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g30682	ARF10	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Gb_23186	HSS, ARF1-BP, ARF2, ORE14	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Gb_25507	ARF16	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
LOC_Os01g48060.1	ARF3, ETT, LOC_Os01g48060	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os04g36054.1	ARF1, LOC_Os04g36054	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os04g43910.1	ARF10, LOC_Os04g43910	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os04g56850.1	MP, IAA24, ARF5,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os05g43920.1	ARF3, ETT, LOC_Os05g43920	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os06g47150.1	ARF16, LOC_Os06g47150	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Len_g17368	ARF6	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g07072	ARF16	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g12182	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g35515	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_103763g0010	ARF6	Auxin response factor 6 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
MA_10431695g0010	ARF19, IAA22, ARF11	Auxin response factor 19 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
MA_10432580g0010	HSS, ARF1-BP, ARF2, ORE14	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
MA_2237g0020	ARF16	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Msp_g10591	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g13614	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g30357	ARF16	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g26452	ARF10	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g42774	ARF16	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g50454	TIR5, MSG1,...	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g06380	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g08938	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g19455	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g25925	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010740	TIR5, MSG1,...	ARF-type transcription factor & original description: CDS=1-2400	0.04	OrthoFinder output from all 47 species
Sam_g16405	No alias	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g19673	No alias	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Smo424113	ARF6	Auxin response factor 6 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Solyc11g069190.2.1	ARF4, Solyc11g069190	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Spa_g26009	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e004554_P002	ARF16, Zm00001e004554	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e012670_P001	ARF16, Zm00001e012670	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
Zm00001e013061_P001	ARF16, Zm00001e013061	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e013639_P001	ARF19, IAA22,...	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Zm00001e016366_P002	ARF11, Zm00001e016366	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Zm00001e041248_P001	ARF10, Zm00001e041248	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004601	peroxidase activity	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005384	manganese ion transmembrane transporter activity	IEP	HCCA
MF	GO:0005506	iron ion binding	IEP	HCCA
BP	GO:0006873	cellular monoatomic ion homeostasis	IEP	HCCA
BP	GO:0006875	cellular metal ion homeostasis	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006979	response to oxidative stress	IEP	HCCA
BP	GO:0008037	cell recognition	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
BP	GO:0019725	cellular homeostasis	IEP	HCCA
MF	GO:0020037	heme binding	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
BP	GO:0030003	cellular monoatomic cation homeostasis	IEP	HCCA
BP	GO:0030026	cellular manganese ion homeostasis	IEP	HCCA
BP	GO:0042592	homeostatic process	IEP	HCCA
MF	GO:0046906	tetrapyrrole binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0046916	cellular transition metal ion homeostasis	IEP	HCCA
BP	GO:0048544	recognition of pollen	IEP	HCCA
BP	GO:0048878	chemical homeostasis	IEP	HCCA
BP	GO:0050801	monoatomic ion homeostasis	IEP	HCCA
BP	GO:0055065	metal ion homeostasis	IEP	HCCA
BP	GO:0055071	manganese ion homeostasis	IEP	HCCA
BP	GO:0055076	transition metal ion homeostasis	IEP	HCCA
BP	GO:0055080	monoatomic cation homeostasis	IEP	HCCA
BP	GO:0055082	cellular chemical homeostasis	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA
BP	GO:0098771	inorganic ion homeostasis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010525	ARF_dom	257	336
IPR033389	AUX/IAA_dom	560	662
IPR003340	B3_DNA-bd	131	231

External Links

No external refs found!

Solyc08g008380.4.1 (ARF9, Solyc08g008380)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation