Aliases : YCF5, Solyc08g022180
Description : assembly factor CcsA of CCS cytochrome f/c6 maturation system (system II)
Gene families : OG0008998 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008998_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc08g022180.1.1 | |
| Cluster | HCCA: Cluster_4 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| ATCG01040 | YCF5 | Cytochrome C assembly protein | 0.44 | OrthoFinder output from all 47 species | |
| Aev_g47212 | YCF5 | assembly factor CcsA of CCS cytochrome f/c6 maturation... | 0.3 | OrthoFinder output from all 47 species | |
| Aob_g08809 | YCF5 | assembly factor CcsA of CCS cytochrome f/c6 maturation... | 0.07 | OrthoFinder output from all 47 species | |
| Cba_g78789 | YCF5 | assembly factor CcsA of CCS cytochrome f/c6 maturation... | 0.13 | OrthoFinder output from all 47 species | |
| Ceric.01G044100.1 | YCF5, Ceric.01G044100 | assembly factor CcsA of CCS cytochrome f/c6 maturation... | 0.11 | OrthoFinder output from all 47 species | |
| Ceric.05G043800.1 | YCF5, Ceric.05G043800 | assembly factor CcsA of CCS cytochrome f/c6 maturation... | 0.11 | OrthoFinder output from all 47 species | |
| Ceric.05G045200.1 | YCF5, Ceric.05G045200 | assembly factor CcsA of CCS cytochrome f/c6 maturation... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.05G046400.1 | YCF5, Ceric.05G046400 | assembly factor CcsA of CCS cytochrome f/c6 maturation... | 0.12 | OrthoFinder output from all 47 species | |
| Ceric.16G017600.1 | YCF5, Ceric.16G017600 | assembly factor CcsA of CCS cytochrome f/c6 maturation... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.18G053700.1 | YCF5, Ceric.18G053700 | assembly factor CcsA of CCS cytochrome f/c6 maturation... | 0.23 | OrthoFinder output from all 47 species | |
| Ceric.19G029400.1 | YCF5, Ceric.19G029400 | assembly factor CcsA of CCS cytochrome f/c6 maturation... | 0.11 | OrthoFinder output from all 47 species | |
| Ceric.35G068700.1 | YCF5, Ceric.35G068700 | assembly factor CcsA of CCS cytochrome f/c6 maturation... | 0.11 | OrthoFinder output from all 47 species | |
| Ceric.39G055700.1 | YCF5, Ceric.39G055700 | assembly factor CcsA of CCS cytochrome f/c6 maturation... | 0.11 | OrthoFinder output from all 47 species | |
| GSVIVT01004975001 | YCF5 | Photosynthesis.photophosphorylation.cytochrome b6/f... | 0.1 | OrthoFinder output from all 47 species | |
| Gb_33050 | YCF5 | assembly factor CcsA of CCS cytochrome f/c6 maturation... | 0.15 | OrthoFinder output from all 47 species | |
| LOC_Os06g46434.1 | YCF5, LOC_Os06g46434 | assembly factor CcsA of CCS cytochrome f/c6 maturation... | 0.46 | OrthoFinder output from all 47 species | |
| Lfl_g37809 | YCF5 | assembly factor CcsA of CCS cytochrome f/c6 maturation... | 0.13 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0017004 | cytochrome complex assembly | IEA | Interproscan |
| MF | GO:0020037 | heme binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0003954 | NADH dehydrogenase activity | IEP | HCCA |
| MF | GO:0003955 | NAD(P)H dehydrogenase (quinone) activity | IEP | HCCA |
| MF | GO:0005506 | iron ion binding | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| MF | GO:0008137 | NADH dehydrogenase (ubiquinone) activity | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| MF | GO:0009055 | electron transfer activity | IEP | HCCA |
| CC | GO:0009521 | photosystem | IEP | HCCA |
| CC | GO:0009522 | photosystem I | IEP | HCCA |
| CC | GO:0009523 | photosystem II | IEP | HCCA |
| CC | GO:0009579 | thylakoid | IEP | HCCA |
| MF | GO:0015399 | primary active transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015453 | oxidoreduction-driven active transmembrane transporter activity | IEP | HCCA |
| BP | GO:0015979 | photosynthesis | IEP | HCCA |
| CC | GO:0016020 | membrane | IEP | HCCA |
| MF | GO:0016491 | oxidoreductase activity | IEP | HCCA |
| MF | GO:0016651 | oxidoreductase activity, acting on NAD(P)H | IEP | HCCA |
| MF | GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | IEP | HCCA |
| CC | GO:0031361 | obsolete integral component of thylakoid membrane | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043169 | cation binding | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| MF | GO:0046872 | metal ion binding | IEP | HCCA |
| MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
| MF | GO:0050136 | NADH dehydrogenase (quinone) activity | IEP | HCCA |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
| MF | GO:0051540 | metal cluster binding | IEP | HCCA |
| CC | GO:0098796 | membrane protein complex | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002541 | Cyt_c_assembly | 78 | 185 |
| No external refs found! |
