Aliases : Solyc08g068340
Description : component eIF3l of eIF3 mRNA-to-PIC binding complex
Gene families : OG0004705 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004705_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc08g068340.3.1 | |
| Cluster | HCCA: Cluster_19 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00109p00071210 | evm_27.TU.AmTr_v1... | Protein biosynthesis.translation... | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g15257 | No alias | component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... | 0.05 | OrthoFinder output from all 47 species | |
| Aop_g00719 | No alias | component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... | 0.07 | OrthoFinder output from all 47 species | |
| Aspi01Gene21773.t1 | Aspi01Gene21773 | component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0033.g024996 | No alias | component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... | 0.08 | OrthoFinder output from all 47 species | |
| Cba_g03952 | No alias | component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.03G028800.1 | Ceric.03G028800 | component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... | 0.06 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00022075.15 | No alias | Protein biosynthesis.translation... | 0.04 | OrthoFinder output from all 47 species | |
| Cre17.g697450 | No alias | Protein biosynthesis.translation... | 0.07 | OrthoFinder output from all 47 species | |
| Dac_g02249 | No alias | component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g05568 | No alias | component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01035660001 | No alias | Protein biosynthesis.translation... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_07559 | No alias | component eIF3l of eIF3 mRNA-to-PIC binding complex | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g12870.1 | LOC_Os01g12870 | component eIF3l of eIF3 mRNA-to-PIC binding complex | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os05g13950.1 | LOC_Os05g13950 | component eIF3l of eIF3 mRNA-to-PIC binding complex | 0.11 | OrthoFinder output from all 47 species | |
| MA_4833g0010 | No alias | component eIF3l of eIF3 mRNA-to-PIC binding complex | 0.07 | OrthoFinder output from all 47 species | |
| MA_4833g0020 | No alias | component eIF3l of eIF3 mRNA-to-PIC binding complex | 0.03 | OrthoFinder output from all 47 species | |
| MA_525836g0010 | No alias | component eIF3l of eIF3 mRNA-to-PIC binding complex | 0.04 | OrthoFinder output from all 47 species | |
| Mp3g02920.1 | No alias | component eIF3l of eIF3 mRNA-to-PIC binding complex | 0.1 | OrthoFinder output from all 47 species | |
| Pir_g15628 | No alias | component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... | 0.04 | OrthoFinder output from all 47 species | |
| Pp3s48_70V3.1 | Pp3s48_70 | RNA polymerase I-associated factor PAF67 | 0.01 | OrthoFinder output from all 47 species | |
| Sam_g26742 | No alias | component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... | 0.06 | OrthoFinder output from all 47 species | |
| Smo146079 | No alias | Protein biosynthesis.translation... | 0.1 | OrthoFinder output from all 47 species | |
| Spa_g01339 | No alias | component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... | 0.05 | OrthoFinder output from all 47 species | |
| Tin_g07453 | No alias | component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e016402_P001 | Zm00001e016402 | component eIF3l of eIF3 mRNA-to-PIC binding complex | 0.16 | OrthoFinder output from all 47 species | |
| Zm00001e026109_P001 | Zm00001e026109 | component eIF3l of eIF3 mRNA-to-PIC binding complex | 0.1 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003743 | translation initiation factor activity | IEA | Interproscan |
| CC | GO:0005737 | cytoplasm | IEA | Interproscan |
| CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000049 | tRNA binding | IEP | HCCA |
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003746 | translation elongation factor activity | IEP | HCCA |
| MF | GO:0004176 | ATP-dependent peptidase activity | IEP | HCCA |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| CC | GO:0005741 | mitochondrial outer membrane | IEP | HCCA |
| CC | GO:0005744 | TIM23 mitochondrial import inner membrane translocase complex | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006414 | translational elongation | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| BP | GO:0006839 | mitochondrial transport | IEP | HCCA |
| MF | GO:0008097 | 5S rRNA binding | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| MF | GO:0019843 | rRNA binding | IEP | HCCA |
| CC | GO:0019867 | outer membrane | IEP | HCCA |
| BP | GO:0030150 | protein import into mitochondrial matrix | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| CC | GO:0030684 | preribosome | IEP | HCCA |
| CC | GO:0031090 | organelle membrane | IEP | HCCA |
| CC | GO:0031966 | mitochondrial membrane | IEP | HCCA |
| CC | GO:0031968 | organelle outer membrane | IEP | HCCA |
| CC | GO:0032040 | small-subunit processome | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0033365 | protein localization to organelle | IEP | HCCA |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0044743 | protein transmembrane import into intracellular organelle | IEP | HCCA |
| BP | GO:0065002 | intracellular protein transmembrane transport | IEP | HCCA |
| BP | GO:0070585 | protein localization to mitochondrion | IEP | HCCA |
| BP | GO:0071806 | protein transmembrane transport | IEP | HCCA |
| BP | GO:0072594 | establishment of protein localization to organelle | IEP | HCCA |
| BP | GO:0072655 | establishment of protein localization to mitochondrion | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| CC | GO:0098588 | bounding membrane of organelle | IEP | HCCA |
| CC | GO:0098798 | mitochondrial protein-containing complex | IEP | HCCA |
| CC | GO:0098800 | inner mitochondrial membrane protein complex | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| BP | GO:1990542 | mitochondrial transmembrane transport | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR019382 | eIF3l | 108 | 503 |
| No external refs found! |
