Solyc08g079110.4.1 (Solyc08g079110)


Aliases : Solyc08g079110

Description : Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana (sp|q8h1q1|tl203_arath : 315.0)


Gene families : OG0006152 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006152_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g079110.4.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g015162 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g02920 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g58664 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g13925 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g06102 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11753 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01001267001 No alias Thylakoid lumenal protein TL20.3, chloroplastic... 0.05 OrthoFinder output from all 47 species
Gb_01023 No alias Thylakoid lumenal protein TL20.3, chloroplastic... 0.05 OrthoFinder output from all 47 species
LOC_Os02g42960.1 LOC_Os02g42960 Thylakoid lumenal protein TL20.3, chloroplastic... 0.07 OrthoFinder output from all 47 species
Mp8g12430.1 No alias Thylakoid lumenal protein TL20.3, chloroplastic... 0.05 OrthoFinder output from all 47 species
Msp_g07925 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18142 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g16845 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001784 No alias not classified & original description: CDS=1-996 0.03 OrthoFinder output from all 47 species
Spa_g18697 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR001646 5peptide_repeat 118 154
IPR001646 5peptide_repeat 160 193
No external refs found!