Solyc09g005970.1.1 (Solyc09g005970)

Aliases : Solyc09g005970

Description : subfamily ABCG transporter

Gene families : OG0000888 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000888_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc09g005970.1.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00181450	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
AT2G37360	No alias	ABC-2 type transporter family protein	0.05	OrthoFinder output from all 47 species
AT2G39350	No alias	ABC-2 type transporter family protein	0.03	OrthoFinder output from all 47 species
AT3G55100	No alias	ABC-2 type transporter family protein	0.03	OrthoFinder output from all 47 species
AT5G19410	No alias	ABC-2 type transporter family protein	0.04	OrthoFinder output from all 47 species
Azfi_s0001.g000828	No alias	subfamily ABCG transporter & original description: CDS=1-2274	0.03	OrthoFinder output from all 47 species
GSVIVT01025582001	No alias	Solute transport.primary active transport.ABC...	0.05	OrthoFinder output from all 47 species
Gb_20468	No alias	subfamily ABCG transporter	0.04	OrthoFinder output from all 47 species
LOC_Os03g17350.1	LOC_Os03g17350	subfamily ABCG transporter	0.03	OrthoFinder output from all 47 species
LOC_Os05g02890.1	LOC_Os05g02890	subfamily ABCG transporter	0.03	OrthoFinder output from all 47 species
Len_g48614	No alias	ABC-G-type lipid transporter *(STR) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g26422	No alias	subfamily ABCG transporter & original description: none	0.03	OrthoFinder output from all 47 species
Mp2g07990.1	No alias	subfamily ABCG transporter	0.02	OrthoFinder output from all 47 species
Mp3g16700.1	No alias	subfamily ABCG transporter	0.04	OrthoFinder output from all 47 species
Msp_g23417	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g61308	No alias	ABC-G-type lipid transporter *(STR) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc04g010210.1.1	Solyc04g010210	subfamily ABCG transporter	0.03	OrthoFinder output from all 47 species
Solyc05g054890.4.1	Solyc05g054890	subfamily ABCG transporter	0.03	OrthoFinder output from all 47 species
Solyc07g062630.1.1	Solyc07g062630	subfamily ABCG transporter	0.07	OrthoFinder output from all 47 species
Tin_g40098	No alias	ABC-G-type lipid transporter *(STR) & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e019365_P001	Zm00001e019365	subfamily ABCG transporter	0.04	OrthoFinder output from all 47 species
Zm00001e027604_P001	Zm00001e027604	subfamily ABCG transporter	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004519	endonuclease activity	IEP	HCCA
MF	GO:0004521	endoribonuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006308	DNA catabolic process	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016849	phosphorus-oxygen lyase activity	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
MF	GO:0033897	ribonuclease T2 activity	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	116	268
IPR013525	ABC_2_trans	436	642

External Links

No external refs found!

Solyc09g005970.1.1 (Solyc09g005970)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation